RNA id: TU652343


Basic Information

Item Value
RNA id TU652343
length 224
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G572173
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8538551 ~ 8538774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAGAAAGAGTCACATAAGGATATTgggtcttaatttgatcactctgttgcaagacattttaaacttgtcgtgtatttgaggtttaaaaaagctTCTGAATTTTGagatttccactttgaaatttcagacttgattttccctcacataaaatgtatcaacccctacagaaATGTCCATTACTCATAATCCACAAAACAATTCAAAtgttctgttgctgcagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU652323 lncRNA upstream 30639 8506186 ~ 8507912 (+) True G572154
TU652291 lncRNA upstream 66044 8471423 ~ 8472507 (+) True G572134
TU652280 lncRNA upstream 81651 8456601 ~ 8456900 (+) True G572126
TU652278 lncRNA upstream 82065 8456163 ~ 8456486 (+) True G572124
TU652221 lncRNA upstream 154270 8383969 ~ 8384281 (+) True G572077
TU652347 lncRNA downstream 2169 8540943 ~ 8541142 (+) True G572177
TU652431 lncRNA downstream 58105 8596879 ~ 8597150 (+) True G572249
TU652435 lncRNA downstream 66081 8604855 ~ 8605723 (+) True G572253
TU652438 lncRNA downstream 71537 8610311 ~ 8610698 (+) True G572255
TU652439 lncRNA downstream 72488 8611262 ~ 8611479 (+) True G572256
XM_036982414.1 mRNA upstream 35420 8478746 ~ 8503131 (+) False LOC110527258
XM_021570901.2 mRNA downstream 37965 8576739 ~ 8578039 (+) True LOC110495575
XM_021572930.2 mRNA downstream 46259 8585033 ~ 8586714 (+) True LOC110496917
XM_036984403.1 mRNA downstream 51607 8590381 ~ 8592862 (+) True LOC118965341
XM_021608436.2 mRNA downstream 58588 8597362 ~ 8598340 (+) True LOC110527267
XM_021608437.2 mRNA downstream 69910 8608684 ~ 8609863 (+) True LOC110527268
TU650665 other upstream 397789 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 452798 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 459211 8077745 ~ 8079340 (+) True G570868
TU650656 other upstream 466993 8063107 ~ 8071558 (+) False G570827
TU652507 other downstream 111206 8649980 ~ 8650898 (+) True G572315
TU652697 other downstream 383561 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 391335 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 393219 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 393219 8931993 ~ 8933878 (+) True G572449

Expression Profile