RNA id: TU652445


Basic Information

Item Value
RNA id TU652445
length 231
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G572262
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8615524 ~ 8615754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTTTAACACTTTAAGCCAGTTTTGATAGCACTTTAAGGTGGTCCTTAAACATGACTAATAAAAGTgttttgttattgacaaaaagccACAGTGACAATGTAGGCCCGTCTATACACCCTGAAGTCCCTGGAATATTATTACTAAGTTACTGACATTAATATTTGCTTCTATATACTTTGACTGACAGGGCCTAGTAACCAATAGGAGTTCTGTTATATTGCATAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU652443 lncRNA upstream 1100 8614187 ~ 8614424 (+) True G572260
TU652439 lncRNA upstream 4045 8611262 ~ 8611479 (+) True G572256
TU652438 lncRNA upstream 4826 8610311 ~ 8610698 (+) True G572255
TU652435 lncRNA upstream 9801 8604855 ~ 8605723 (+) True G572253
TU652431 lncRNA upstream 18374 8596879 ~ 8597150 (+) True G572249
TU652495 lncRNA downstream 23634 8639388 ~ 8639656 (+) True G572303
TU652501 lncRNA downstream 28797 8644551 ~ 8645976 (+) True G572309
TU652503 lncRNA downstream 30670 8646424 ~ 8647117 (+) True G572311
TU652514 lncRNA downstream 41846 8657600 ~ 8658430 (+) True G572322
TU652529 lncRNA downstream 59514 8675268 ~ 8675484 (+) True G572337
XM_021608437.2 mRNA upstream 5661 8608684 ~ 8609863 (+) True LOC110527268
XM_021608436.2 mRNA upstream 17184 8597362 ~ 8598340 (+) True LOC110527267
XM_036984403.1 mRNA upstream 22662 8590381 ~ 8592862 (+) True LOC118965341
XM_021572930.2 mRNA upstream 28810 8585033 ~ 8586714 (+) True LOC110496917
XM_021570901.2 mRNA upstream 37485 8576739 ~ 8578039 (+) True LOC110495575
XM_036982429.1 mRNA downstream 4909 8620663 ~ 8626882 (+) False LOC110527270
XM_036982430.1 mRNA downstream 4909 8620663 ~ 8626882 (+) False LOC110527270
XM_036982431.1 mRNA downstream 4911 8620665 ~ 8626882 (+) True LOC110527270
XM_036982442.1 mRNA downstream 272258 8888012 ~ 8890717 (+) False LOC118965237
XM_036982441.1 mRNA downstream 272259 8888013 ~ 8890717 (+) False LOC118965237
TU650665 other upstream 474762 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 529771 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 536184 8077745 ~ 8079340 (+) True G570868
TU650656 other upstream 543966 8063107 ~ 8071558 (+) False G570827
TU652507 other downstream 34226 8649980 ~ 8650898 (+) True G572315
TU652697 other downstream 306581 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 314355 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 316239 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 316239 8931993 ~ 8933878 (+) True G572449

Expression Profile