RNA id: TU652501


Basic Information

Item Value
RNA id TU652501
length 1426
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G572309
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8644551 ~ 8645976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatatggaagagacatttcagttgaaggcaggTTTCTCCCTTTAAACATATTCCCGTGTCAAACATATCCTTACAGAGAACTGTGTGTTTAACAAAAATCAATGTGAATAGTACGCCTAGTTAATCTAGTGACCTCTGTGTACTCTGCAGATACATTCAATGGACCTTATTCACATATCAGAGTCTCAGAgtagcagtgctgatctaggatcaggtcccctttGTTTATATCATCTTATTCTGTAATGATGATCCTAAAAGgacatctgatcctagatcagccgtCCTACCCTGAGactctttgtgaatacaggccaaGGTCTTCCATTATTGTCAGTTTCACTTTAatgttcaaatagtatttaaacccTGGTCAGGAGTATTCAACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTAAAGTATTCACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTAAAGTATTCACTGTCACTAACTGTCACTAAAATATTCAACTGTCACTAACTGTCACTAAAGTATTCACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTAAAGTATTCACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTAAAGTATTCACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTCAAGTATTCACTGTCACTAACTGTCACTAAAGTATTCAACTGTCACTAACTGTCACTCAAGTATTCACTGTCACTAACTGTCACTAAAGTATTCACTGTCACTAACTGTCACTAAAGTATTCACTGTCACTAACGAGTAGCCATTCTATAGTCTCCCAACAGGGAGCAGTAGAGTCTGGATAAGGACAGAGCCAGCGGCCCCCTACAGGCTTCATGCACTGGATCCTCCTCAACCAGAACTACATACTCACTGTGAGTGAACACTTCTGTACCCTTCTACAATCTACACCATACTAACTGAATGTGTCATCCTTCTACAATCTATACCATACTAACTGAATGTGTCATCCTTCTACAATCTATACCATACTAACTGAATGTGTCATCCTTCTACAATCTACACCATACTAACTGAATGTGTCATCCTTCTACAATCTACACCATACTAACTGAATGTGTCATCCTTCTACAATCTACACCATACTAACTAAATGTGTCATCCTTCTATAATCTACACCATACTAACTGAATGTGTCATCCTTCTACAATCTACACCATACTAACTGAATGTGTCATCCTTCTACAATCTACACCATACTAACTGAATGTGTCATCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU652495 lncRNA upstream 4895 8639388 ~ 8639656 (+) True G572303
TU652445 lncRNA upstream 28797 8615524 ~ 8615754 (+) True G572262
TU652443 lncRNA upstream 30127 8614187 ~ 8614424 (+) True G572260
TU652439 lncRNA upstream 33072 8611262 ~ 8611479 (+) True G572256
TU652438 lncRNA upstream 33853 8610311 ~ 8610698 (+) True G572255
TU652503 lncRNA downstream 448 8646424 ~ 8647117 (+) True G572311
TU652514 lncRNA downstream 11624 8657600 ~ 8658430 (+) True G572322
TU652529 lncRNA downstream 29292 8675268 ~ 8675484 (+) True G572337
TU652532 lncRNA downstream 32367 8678343 ~ 8678631 (+) True G572340
TU652534 lncRNA downstream 35029 8681005 ~ 8681212 (+) True G572342
XM_036982429.1 mRNA upstream 17669 8620663 ~ 8626882 (+) False LOC110527270
XM_036982430.1 mRNA upstream 17669 8620663 ~ 8626882 (+) False LOC110527270
XM_036982431.1 mRNA upstream 17669 8620665 ~ 8626882 (+) True LOC110527270
XM_021608437.2 mRNA upstream 34688 8608684 ~ 8609863 (+) True LOC110527268
XM_021608436.2 mRNA upstream 46211 8597362 ~ 8598340 (+) True LOC110527267
XM_036982442.1 mRNA downstream 242036 8888012 ~ 8890717 (+) False LOC118965237
XM_036982441.1 mRNA downstream 242037 8888013 ~ 8890717 (+) False LOC118965237
XM_036982450.1 mRNA downstream 264715 8910691 ~ 8912800 (+) True LOC110512356
XM_036982452.1 mRNA downstream 507961 9153937 ~ 9159959 (+) True LOC110527273
XM_036982454.1 mRNA downstream 539299 9185275 ~ 9664625 (+) False LOC110515808
TU650665 other upstream 503789 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 558798 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 565211 8077745 ~ 8079340 (+) True G570868
TU650656 other upstream 572993 8063107 ~ 8071558 (+) False G570827
TU652507 other downstream 4004 8649980 ~ 8650898 (+) True G572315
TU652697 other downstream 276359 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 284133 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 286017 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 286017 8931993 ~ 8933878 (+) True G572449

Expression Profile