RNA id: TU652532


Basic Information

Item Value
RNA id TU652532
length 289
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G572340
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8678343 ~ 8678631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU652529 lncRNA upstream 2859 8675268 ~ 8675484 (+) True G572337
TU652514 lncRNA upstream 19913 8657600 ~ 8658430 (+) True G572322
TU652503 lncRNA upstream 31226 8646424 ~ 8647117 (+) True G572311
TU652501 lncRNA upstream 32367 8644551 ~ 8645976 (+) True G572309
TU652495 lncRNA upstream 38687 8639388 ~ 8639656 (+) True G572303
TU652534 lncRNA downstream 2374 8681005 ~ 8681212 (+) True G572342
TU652544 lncRNA downstream 52275 8730906 ~ 8731314 (+) True G572351
TU652546 lncRNA downstream 52748 8731379 ~ 8731602 (+) True G572353
TU652554 lncRNA downstream 64344 8742975 ~ 8743549 (+) True G572361
TU652558 lncRNA downstream 69438 8748069 ~ 8749136 (+) True G572364
XM_036982429.1 mRNA upstream 51461 8620663 ~ 8626882 (+) False LOC110527270
XM_036982430.1 mRNA upstream 51461 8620663 ~ 8626882 (+) False LOC110527270
XM_036982431.1 mRNA upstream 51461 8620665 ~ 8626882 (+) True LOC110527270
XM_021608437.2 mRNA upstream 68480 8608684 ~ 8609863 (+) True LOC110527268
XM_021608436.2 mRNA upstream 80003 8597362 ~ 8598340 (+) True LOC110527267
XM_036982442.1 mRNA downstream 209381 8888012 ~ 8890717 (+) False LOC118965237
XM_036982441.1 mRNA downstream 209382 8888013 ~ 8890717 (+) False LOC118965237
XM_036982450.1 mRNA downstream 232060 8910691 ~ 8912800 (+) True LOC110512356
XM_036982452.1 mRNA downstream 475306 9153937 ~ 9159959 (+) True LOC110527273
XM_036982454.1 mRNA downstream 506644 9185275 ~ 9664625 (+) False LOC110515808
TU652507 other upstream 27445 8649980 ~ 8650898 (+) True G572315
TU650665 other upstream 537581 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 592590 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 599003 8077745 ~ 8079340 (+) True G570868
TU650657 other upstream 606785 8063107 ~ 8071558 (+) False G570827
TU652697 other downstream 243704 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 251478 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 253362 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 253362 8931993 ~ 8933878 (+) True G572449
TU653149 other downstream 1288036 9966667 ~ 9975128 (+) True LOC110497049

Expression Profile