RNA id: TU652573


Basic Information

Item Value
RNA id TU652573
length 350
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G572379
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8757761 ~ 8758110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttccattttggtttcatctgaccagagcaccttcttccacgtttggtgtgtctcccaggtggcttgtggcaaactttaaccgacactttttatggatatctttaagaaatgtctttcttcttgccactcttccataaaggccagatttgtgcaatatacaactgattgttgccctatggacaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU652571 lncRNA upstream 177 8757248 ~ 8757584 (+) True G572377
TU652570 lncRNA upstream 721 8756816 ~ 8757040 (+) True G572376
TU652567 lncRNA upstream 2056 8755469 ~ 8755705 (+) True G572373
TU652566 lncRNA upstream 2370 8755156 ~ 8755391 (+) True G572372
TU652561 lncRNA upstream 6722 8750725 ~ 8751039 (+) True G572367
TU652667 lncRNA downstream 106518 8864628 ~ 8864914 (+) True G572457
TU652675 lncRNA downstream 119737 8877847 ~ 8878047 (+) True G572465
TU652677 lncRNA downstream 130180 8888290 ~ 8888616 (+) True LOC118965237
TU652685 lncRNA downstream 144747 8902857 ~ 8903331 (+) False G572470
TU652686 lncRNA downstream 144747 8902857 ~ 8903408 (+) False G572470
XM_036982429.1 mRNA upstream 130879 8620663 ~ 8626882 (+) False LOC110527270
XM_036982430.1 mRNA upstream 130879 8620663 ~ 8626882 (+) False LOC110527270
XM_036982431.1 mRNA upstream 130879 8620665 ~ 8626882 (+) True LOC110527270
XM_021608437.2 mRNA upstream 147898 8608684 ~ 8609863 (+) True LOC110527268
XM_021608436.2 mRNA upstream 159421 8597362 ~ 8598340 (+) True LOC110527267
XM_036982442.1 mRNA downstream 129902 8888012 ~ 8890717 (+) False LOC118965237
XM_036982441.1 mRNA downstream 129903 8888013 ~ 8890717 (+) False LOC118965237
XM_036982450.1 mRNA downstream 152581 8910691 ~ 8912800 (+) True LOC110512356
XM_036982452.1 mRNA downstream 395827 9153937 ~ 9159959 (+) True LOC110527273
XM_036982454.1 mRNA downstream 427165 9185275 ~ 9664625 (+) False LOC110515808
TU652507 other upstream 106863 8649980 ~ 8650898 (+) True G572315
TU650665 other upstream 616999 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 672008 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 678421 8077745 ~ 8079340 (+) True G570868
TU650657 other upstream 686203 8063107 ~ 8071558 (+) False G570827
TU652697 other downstream 164225 8922335 ~ 8922794 (+) True G572476
TU652659 other downstream 171999 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 173883 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 173883 8931993 ~ 8933878 (+) True G572449
TU653149 other downstream 1208557 9966667 ~ 9975128 (+) True LOC110497049

Expression Profile