RNA id: TU652697


Basic Information

Item Value
RNA id TU652697
length 460
RNA type TUCP
GC content 0.47
exon number 1
gene id G572476
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8922335 ~ 8922794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAACTTCATTGTTTGGATGATGCTTGAAATCTTAAATCCATAAATTGTTGTCAAATTTTCCACATCTGCTGCATTtggaacacactcacacacataaacGTGTGCATGCTTTACCTAATAACGCTACAAGAATGCAGAGGAGAAATGACCATAATCACCTAGCTCTTGAGGTAGGCTTAATAACCATAGACTGCTACACCTGGGAAAGAGTCAACACAGAGGTGGTGGGAGAAAAGACAGTCACTGATCTATATTtactgcagagagacagagggagaggtggtgAGATGGTGACAGGGTCCTACATAATGCATGAAGGCCAGGCGGCCCCTCAGTGCAGCAGCACTGCCTTGTCTTCATCCACCAACCCACCAGCTCTCCTACTGAACATCCATCTGGCTACCGTTTCCTACTGCACACCCATCTGGCTACCACCTACTGCACATCCATCTGGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU652695 lncRNA upstream 2690 8918778 ~ 8919645 (+) True G572475
TU652691 lncRNA upstream 13635 8908085 ~ 8908700 (+) True G572473
TU652690 lncRNA upstream 17142 8904600 ~ 8905193 (+) True G572472
TU652687 lncRNA upstream 18844 8902857 ~ 8903491 (+) True G572470
TU652686 lncRNA upstream 18927 8902857 ~ 8903408 (+) False G572470
TU652797 lncRNA downstream 97097 9019891 ~ 9020138 (+) True G572567
TU652838 lncRNA downstream 144752 9067546 ~ 9067895 (+) True G572604
TU652844 lncRNA downstream 152650 9075444 ~ 9075890 (+) True G572610
TU652862 lncRNA downstream 171107 9093901 ~ 9103682 (+) False G572615
TU652858 lncRNA downstream 177883 9100677 ~ 9111219 (+) False G572615
XM_036982450.1 mRNA upstream 9535 8910691 ~ 8912800 (+) True LOC110512356
XM_036982442.1 mRNA upstream 31618 8888012 ~ 8890717 (+) False LOC118965237
XM_036982441.1 mRNA upstream 31618 8888013 ~ 8890717 (+) False LOC118965237
XM_036982429.1 mRNA upstream 295453 8620663 ~ 8626882 (+) False LOC110527270
XM_036982430.1 mRNA upstream 295453 8620663 ~ 8626882 (+) False LOC110527270
XM_036982452.1 mRNA downstream 231143 9153937 ~ 9159959 (+) True LOC110527273
XM_036982454.1 mRNA downstream 262481 9185275 ~ 9664625 (+) False LOC110515808
XM_036982455.1 mRNA downstream 262481 9185275 ~ 9664625 (+) True LOC110515808
XR_005052497.1 mRNA downstream 741888 9664682 ~ 9669888 (+) True LOC118965238
XM_036982456.1 mRNA downstream 822547 9745341 ~ 9758984 (+) False LOC110527090
TU652507 other upstream 271437 8649980 ~ 8650898 (+) True G572315
TU650665 other upstream 781573 8140282 ~ 8140762 (+) True G570834
TU650714 other upstream 836582 8084271 ~ 8085753 (+) True G570875
TU650706 other upstream 842995 8077745 ~ 8079340 (+) True G570868
TU650656 other upstream 850777 8063107 ~ 8071558 (+) False G570827
TU652659 other downstream 7315 8930109 ~ 8933878 (+) False G572449
TU652657 other downstream 9199 8931993 ~ 8933878 (+) False G572449
TU652658 other downstream 9199 8931993 ~ 8933878 (+) True G572449
TU653149 other downstream 1043873 9966667 ~ 9975128 (+) True LOC110497049
TU653729 other downstream 1205327 10128121 ~ 10132016 (+) True G573366

Expression Profile