RNA id: TU652998


Basic Information

Item Value
RNA id TU652998
length 298
lncRNA type intronic
GC content 0.42
exon number 3
gene id G572728
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 9369311 ~ 9371956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaactatcaggtaaaggactggggagttaactatcaggtaaaggactggggagtttagtgtagtgagttaactatcaggtaaaggactggggagtttagtgtagtgagttaactatcaggtaaaggactggggagtttagtgtagtgagttaactatcaggtaaaggattGGGGAGtatagtgtagtgagttaactaacaggtaaaggactggggagtttagtgtagtgagttaactatcaggtaaaggactggggagtttagtgtagtgagttaactatcaggtaaaggactggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU652981 lncRNA upstream 21454 9343803 ~ 9347857 (+) True G572715
TU652984 lncRNA upstream 23248 9344306 ~ 9346063 (+) True G572716
TU652975 lncRNA upstream 29750 9339195 ~ 9339561 (+) False G572711
TU652976 lncRNA upstream 29820 9339195 ~ 9339491 (+) True G572711
TU652974 lncRNA upstream 30293 9338327 ~ 9339018 (+) True G572710
TU653049 lncRNA downstream 144509 9516465 ~ 9516918 (+) False G572773
TU653050 lncRNA downstream 144509 9516465 ~ 9516918 (+) True G572773
TU653065 lncRNA downstream 183006 9554962 ~ 9560301 (+) True G572788
TU653112 lncRNA downstream 305012 9676968 ~ 9678393 (+) True G572833
TU653119 lncRNA downstream 315313 9687269 ~ 9687644 (+) True G572838
XM_036982452.1 mRNA upstream 209352 9153937 ~ 9159959 (+) True LOC110527273
XM_036982450.1 mRNA upstream 456511 8910691 ~ 8912800 (+) True LOC110512356
XM_036982442.1 mRNA upstream 478594 8888012 ~ 8890717 (+) False LOC118965237
XM_036982441.1 mRNA upstream 478594 8888013 ~ 8890717 (+) False LOC118965237
XM_036982431.1 mRNA upstream 742429 8620665 ~ 8626882 (+) True LOC110527270
XR_005052497.1 mRNA downstream 292726 9664682 ~ 9669888 (+) True LOC118965238
XM_036982456.1 mRNA downstream 373385 9745341 ~ 9758984 (+) False LOC110527090
XM_036982457.1 mRNA downstream 373519 9745475 ~ 9758984 (+) True LOC110527090
NM_001124292.1 mRNA downstream 391246 9763202 ~ 9769678 (+) False LOC100135948
XM_036981847.1 mRNA downstream 391272 9763228 ~ 9769681 (+) True LOC100135948
TU652659 other upstream 435433 8930109 ~ 8933878 (+) False G572449
TU652657 other upstream 435433 8931993 ~ 8933878 (+) False G572449
TU652658 other upstream 435433 8931993 ~ 8933878 (+) True G572449
TU652697 other upstream 446517 8922335 ~ 8922794 (+) True G572476
TU652507 other upstream 718413 8649980 ~ 8650898 (+) True G572315
TU653149 other downstream 594711 9966667 ~ 9975128 (+) True LOC110497049
TU653729 other downstream 756165 10128121 ~ 10132016 (+) True G573366
TU653759 other downstream 807463 10179419 ~ 10179835 (+) False LOC110527289
TU654524 other downstream 1504151 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 1631548 11003504 ~ 11076001 (+) True G574122

Expression Profile