RNA id: TU653132


Basic Information

Item Value
RNA id TU653132
length 245
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G572851
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 9719076 ~ 9719320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCTGTACTACAGAATGTAtcaaggtgttgggtttgtgcatTGTTACCAGACAGTGTTGAGACTATGACATCAGAGTGTTGGGTTTGTGGATTGTTACCAGACAGTGTTGAGACTATGACATCAGAGTGTTGGGTTTGTGGATTGTTACCAGACAGTATTGAGACTGTGACATCAGAGTGTTTGGTTTGTGGATTGTTACCAGATAGTGTTGAGACTATGACATCAGAGTGTTGGGTTTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU653119 lncRNA upstream 31432 9687269 ~ 9687644 (+) True G572838
TU653112 lncRNA upstream 40683 9676968 ~ 9678393 (+) True G572833
TU653065 lncRNA upstream 158775 9554962 ~ 9560301 (+) True G572788
TU653049 lncRNA upstream 202158 9516465 ~ 9516918 (+) False G572773
TU653050 lncRNA upstream 202158 9516465 ~ 9516918 (+) True G572773
TU653201 lncRNA downstream 146987 9866307 ~ 9866539 (+) True G572917
TU653164 lncRNA downstream 147260 9866580 ~ 9873079 (+) True LOC118965239
TU653154 lncRNA downstream 237728 9957048 ~ 9957419 (+) True G572872
TU653232 lncRNA downstream 261634 9980954 ~ 9981175 (+) True G572948
TU653233 lncRNA downstream 262293 9981613 ~ 9982021 (+) True G572949
XR_005052497.1 mRNA upstream 49188 9664682 ~ 9669888 (+) True LOC118965238
XM_036982454.1 mRNA upstream 54451 9185275 ~ 9664625 (+) False LOC110515808
XM_036982455.1 mRNA upstream 54451 9185275 ~ 9664625 (+) True LOC110515808
XM_036982452.1 mRNA upstream 559117 9153937 ~ 9159959 (+) True LOC110527273
XM_036982450.1 mRNA upstream 806276 8910691 ~ 8912800 (+) True LOC110512356
XM_036982456.1 mRNA downstream 26021 9745341 ~ 9758984 (+) False LOC110527090
XM_036982457.1 mRNA downstream 26155 9745475 ~ 9758984 (+) True LOC110527090
NM_001124292.1 mRNA downstream 43882 9763202 ~ 9769678 (+) False LOC100135948
XM_036981847.1 mRNA downstream 43908 9763228 ~ 9769681 (+) True LOC100135948
XM_036982458.1 mRNA downstream 56719 9776039 ~ 9781629 (+) True LOC110528748
TU652659 other upstream 785198 8930109 ~ 8933878 (+) False G572449
TU652657 other upstream 785198 8931993 ~ 8933878 (+) False G572449
TU652658 other upstream 785198 8931993 ~ 8933878 (+) True G572449
TU652697 other upstream 796282 8922335 ~ 8922794 (+) True G572476
TU652507 other upstream 1068178 8649980 ~ 8650898 (+) True G572315
TU653149 other downstream 247347 9966667 ~ 9975128 (+) True LOC110497049
TU653729 other downstream 408801 10128121 ~ 10132016 (+) True G573366
TU653759 other downstream 460099 10179419 ~ 10179835 (+) False LOC110527289
TU654524 other downstream 1156787 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 1284184 11003504 ~ 11076001 (+) True G574122

Expression Profile