RNA id: TU653233


Basic Information

Item Value
RNA id TU653233
length 409
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G572949
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 9981613 ~ 9982021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTGGGTTTACCTCAACCTACTATCTCCATATACCCTCATAGTGGGTTTACCTCAACCTACTATCTCCATATACCCTCATAGTGGGTTTACCTCAACCTGCTGTCTACATATACCCTCATATTGGGTTTACCTCaacctactgtctccatatacccTCATATTGGGTTTACCTCAACCTACTATCTCCATATACCCTCATAGTGGGTTTACCTCAACCTACTATCTCCATATACCCTCATAGTGGGTTTACCTCAACCTGCTGTCTCCATATGCCATCAAAGTGGGTTTACCTCAACCTACTATCTCCATATACCCTCATAGTGGGTTTACCTCaacctactgtctccatatacccTCATAGTGGGTATACCTCAACCTACTATCTCCATATACCATCATAATGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU653232 lncRNA upstream 438 9980954 ~ 9981175 (+) True G572948
TU653154 lncRNA upstream 24194 9957048 ~ 9957419 (+) True G572872
TU653164 lncRNA upstream 108534 9866580 ~ 9873079 (+) True LOC118965239
TU653201 lncRNA upstream 115074 9866307 ~ 9866539 (+) True G572917
TU653132 lncRNA upstream 262293 9719076 ~ 9719320 (+) True G572851
TU653150 lncRNA downstream 1930 9983951 ~ 9984304 (+) True G572868
TU653153 lncRNA downstream 2362 9984383 ~ 9986465 (+) True G572871
TU653159 lncRNA downstream 4507 9986528 ~ 9987182 (+) True G572877
TU653240 lncRNA downstream 12802 9994823 ~ 9996160 (+) True G572956
TU653245 lncRNA downstream 17705 9999726 ~ 9999997 (+) True G572960
XM_036982462.1 mRNA upstream 1183 9879599 ~ 9980430 (+) False LOC110497049
XM_036982459.1 mRNA upstream 105068 9783076 ~ 9876545 (+) False LOC118965239
XM_036982461.1 mRNA upstream 105068 9817331 ~ 9876545 (+) False LOC118965239
XM_036982460.1 mRNA upstream 105068 9817332 ~ 9876545 (+) False LOC118965239
XM_036982458.1 mRNA upstream 199984 9776039 ~ 9781629 (+) True LOC110528748
XM_036982490.1 mRNA downstream 191594 10173615 ~ 10233047 (+) False LOC110527289
XR_005052502.1 mRNA downstream 391897 10373918 ~ 10378145 (+) True LOC118965244
XM_036982498.1 mRNA downstream 399004 10381025 ~ 10410589 (+) False LOC110527198
XM_036982497.1 mRNA downstream 399007 10381028 ~ 10410589 (+) True LOC110527198
XM_021610859.2 mRNA downstream 439163 10421184 ~ 10423568 (+) True LOC110528725
TU653149 other upstream 6485 9966667 ~ 9975128 (+) True LOC110497049
TU652659 other upstream 1047735 8930109 ~ 8933878 (+) False G572449
TU652657 other upstream 1047735 8931993 ~ 8933878 (+) False G572449
TU652658 other upstream 1047735 8931993 ~ 8933878 (+) True G572449
TU652697 other upstream 1058819 8922335 ~ 8922794 (+) True G572476
TU653729 other downstream 146100 10128121 ~ 10132016 (+) True G573366
TU653759 other downstream 197398 10179419 ~ 10179835 (+) False LOC110527289
TU654524 other downstream 894086 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 1021483 11003504 ~ 11076001 (+) True G574122
TU654699 other downstream 1119524 11101545 ~ 11102286 (+) True G574194

Expression Profile