RNA id: TU653153


Basic Information

Item Value
RNA id TU653153
length 2083
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G572871
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 9984383 ~ 9986465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTAATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTGTCTTAGTAAACAACCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTAATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTGTCTTAGTAAACAACCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAATAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAATAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTGTCTTAATAAACAACCTTTATCCTGCTGATACAACACACACGTTCTCTTAATAAACAATCTTTATCCTGCTGATACTACACACACATTGTCTTCATAAACCAACTCAAGGGGATATGTTTGTGTAAAATATAGTCCCGGACTGCATCTCATGTCTTGAAAGGTTGCCTTACCTCCCCACTTTATCTGGAGCAcagccagtattggactgagtactgagactcagccagtattggactgagtactgagactcagccagtattggactgagtactgagacgcagccagtattggactgagtactgagatgcagccagtattggactgagtactgagacgcagccagtattggactgagtactgagatgcagccagtattggactgagtactgagatgcagccagtattggactgagtactgagacacagccagtattggactgagtactgagacgcagccagtattggactgagtactgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU653150 lncRNA upstream 79 9983951 ~ 9984304 (+) True G572868
TU653233 lncRNA upstream 2362 9981613 ~ 9982021 (+) True G572949
TU653232 lncRNA upstream 3208 9980954 ~ 9981175 (+) True G572948
TU653154 lncRNA upstream 26964 9957048 ~ 9957419 (+) True G572872
TU653164 lncRNA upstream 111304 9866580 ~ 9873079 (+) True LOC118965239
TU653159 lncRNA downstream 63 9986528 ~ 9987182 (+) True G572877
TU653240 lncRNA downstream 8358 9994823 ~ 9996160 (+) True G572956
TU653245 lncRNA downstream 13261 9999726 ~ 9999997 (+) True G572960
TU653246 lncRNA downstream 14064 10000529 ~ 10000771 (+) True G572961
TU653157 lncRNA downstream 14835 10001300 ~ 10005553 (+) True G572875
XM_036982462.1 mRNA upstream 3953 9879599 ~ 9980430 (+) False LOC110497049
XM_036982459.1 mRNA upstream 107838 9783076 ~ 9876545 (+) False LOC118965239
XM_036982461.1 mRNA upstream 107838 9817331 ~ 9876545 (+) False LOC118965239
XM_036982460.1 mRNA upstream 107838 9817332 ~ 9876545 (+) False LOC118965239
XM_036982458.1 mRNA upstream 202754 9776039 ~ 9781629 (+) True LOC110528748
XM_036982490.1 mRNA downstream 187150 10173615 ~ 10233047 (+) False LOC110527289
XR_005052502.1 mRNA downstream 387453 10373918 ~ 10378145 (+) True LOC118965244
XM_036982498.1 mRNA downstream 394560 10381025 ~ 10410589 (+) False LOC110527198
XM_036982497.1 mRNA downstream 394563 10381028 ~ 10410589 (+) True LOC110527198
XM_021610859.2 mRNA downstream 434719 10421184 ~ 10423568 (+) True LOC110528725
TU653149 other upstream 9255 9966667 ~ 9975128 (+) True LOC110497049
TU652659 other upstream 1050505 8930109 ~ 8933878 (+) False G572449
TU652657 other upstream 1050505 8931993 ~ 8933878 (+) False G572449
TU652658 other upstream 1050505 8931993 ~ 8933878 (+) True G572449
TU652697 other upstream 1061589 8922335 ~ 8922794 (+) True G572476
TU653729 other downstream 141656 10128121 ~ 10132016 (+) True G573366
TU653759 other downstream 192954 10179419 ~ 10179835 (+) False LOC110527289
TU654524 other downstream 889642 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 1017039 11003504 ~ 11076001 (+) True G574122
TU654699 other downstream 1115080 11101545 ~ 11102286 (+) True G574194

Expression Profile