RNA id: TU653245


Basic Information

Item Value
RNA id TU653245
length 272
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G572960
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 9999726 ~ 9999997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatggagcattggaagttaagaccaggtttatccattgttctctctcttacgtctgggcttcacaagagaaggtcacagttggcttgtggggtatctttcatttatttggcgtgggctacggccaaacagtagcctgtggaAAGTTGTgttaataaaccgtcaattcgtaaactcaatcctctgtctggacaattgttcctttatgatttagtcaggtcattacaatactttcctgtggatatttggGCTCAAACTTACACAGCCAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU653240 lncRNA upstream 3566 9994823 ~ 9996160 (+) True G572956
TU653159 lncRNA upstream 12544 9986528 ~ 9987182 (+) True G572877
TU653153 lncRNA upstream 13261 9984383 ~ 9986465 (+) True G572871
TU653150 lncRNA upstream 15422 9983951 ~ 9984304 (+) True G572868
TU653233 lncRNA upstream 17705 9981613 ~ 9982021 (+) True G572949
TU653246 lncRNA downstream 532 10000529 ~ 10000771 (+) True G572961
TU653157 lncRNA downstream 1303 10001300 ~ 10005553 (+) True G572875
TU653250 lncRNA downstream 9854 10009851 ~ 10010850 (+) True G572963
TU653252 lncRNA downstream 11191 10011188 ~ 10012739 (+) True G572964
TU653257 lncRNA downstream 20343 10020340 ~ 10021565 (+) False G572969
XM_036982462.1 mRNA upstream 19296 9879599 ~ 9980430 (+) False LOC110497049
XM_036982459.1 mRNA upstream 123181 9783076 ~ 9876545 (+) False LOC118965239
XM_036982461.1 mRNA upstream 123181 9817331 ~ 9876545 (+) False LOC118965239
XM_036982460.1 mRNA upstream 123181 9817332 ~ 9876545 (+) False LOC118965239
XM_036982458.1 mRNA upstream 218097 9776039 ~ 9781629 (+) True LOC110528748
XM_036982490.1 mRNA downstream 173618 10173615 ~ 10233047 (+) False LOC110527289
XR_005052502.1 mRNA downstream 373921 10373918 ~ 10378145 (+) True LOC118965244
XM_036982498.1 mRNA downstream 381028 10381025 ~ 10410589 (+) False LOC110527198
XM_036982497.1 mRNA downstream 381031 10381028 ~ 10410589 (+) True LOC110527198
XM_021610859.2 mRNA downstream 421187 10421184 ~ 10423568 (+) True LOC110528725
TU653149 other upstream 24598 9966667 ~ 9975128 (+) True LOC110497049
TU652659 other upstream 1065848 8930109 ~ 8933878 (+) False G572449
TU652657 other upstream 1065848 8931993 ~ 8933878 (+) False G572449
TU652658 other upstream 1065848 8931993 ~ 8933878 (+) True G572449
TU652697 other upstream 1076932 8922335 ~ 8922794 (+) True G572476
TU653729 other downstream 128124 10128121 ~ 10132016 (+) True G573366
TU653759 other downstream 179422 10179419 ~ 10179835 (+) False LOC110527289
TU654524 other downstream 876110 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 1003507 11003504 ~ 11076001 (+) True G574122
TU654699 other downstream 1101548 11101545 ~ 11102286 (+) True G574194

Expression Profile