RNA id: TU653246


Basic Information

Item Value
RNA id TU653246
length 243
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G572961
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 10000529 ~ 10000771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTTTAATTGCAAGCTACTATACTTTTTTGTGTGGCTGCTAGCCAAATAGTGATGCAcatctgttgtcatctgatgaataCGAAGCTACTTTCTGCCGAATgttttgcatttatttattttgtcagaTGAAAAAGCGTAGTTGCACACCTCTTATCACTCCATtgaagcaacaacaacaaaacacttgaCTTCCAATATAAATACCAGGTGAAATGGTTTAAAACGCAGAAtgattattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU653245 lncRNA upstream 532 9999726 ~ 9999997 (+) True G572960
TU653240 lncRNA upstream 4369 9994823 ~ 9996160 (+) True G572956
TU653159 lncRNA upstream 13347 9986528 ~ 9987182 (+) True G572877
TU653153 lncRNA upstream 14064 9984383 ~ 9986465 (+) True G572871
TU653150 lncRNA upstream 16225 9983951 ~ 9984304 (+) True G572868
TU653157 lncRNA downstream 529 10001300 ~ 10005553 (+) True G572875
TU653250 lncRNA downstream 9080 10009851 ~ 10010850 (+) True G572963
TU653252 lncRNA downstream 10417 10011188 ~ 10012739 (+) True G572964
TU653257 lncRNA downstream 19569 10020340 ~ 10021565 (+) False G572969
TU653258 lncRNA downstream 19569 10020340 ~ 10022177 (+) True G572969
XM_036982462.1 mRNA upstream 20099 9879599 ~ 9980430 (+) False LOC110497049
XM_036982459.1 mRNA upstream 123984 9783076 ~ 9876545 (+) False LOC118965239
XM_036982461.1 mRNA upstream 123984 9817331 ~ 9876545 (+) False LOC118965239
XM_036982460.1 mRNA upstream 123984 9817332 ~ 9876545 (+) False LOC118965239
XM_036982458.1 mRNA upstream 218900 9776039 ~ 9781629 (+) True LOC110528748
XM_036982490.1 mRNA downstream 172844 10173615 ~ 10233047 (+) False LOC110527289
XR_005052502.1 mRNA downstream 373147 10373918 ~ 10378145 (+) True LOC118965244
XM_036982498.1 mRNA downstream 380254 10381025 ~ 10410589 (+) False LOC110527198
XM_036982497.1 mRNA downstream 380257 10381028 ~ 10410589 (+) True LOC110527198
XM_021610859.2 mRNA downstream 420413 10421184 ~ 10423568 (+) True LOC110528725
TU653149 other upstream 25401 9966667 ~ 9975128 (+) True LOC110497049
TU652659 other upstream 1066651 8930109 ~ 8933878 (+) False G572449
TU652657 other upstream 1066651 8931993 ~ 8933878 (+) False G572449
TU652658 other upstream 1066651 8931993 ~ 8933878 (+) True G572449
TU652697 other upstream 1077735 8922335 ~ 8922794 (+) True G572476
TU653729 other downstream 127350 10128121 ~ 10132016 (+) True G573366
TU653759 other downstream 178648 10179419 ~ 10179835 (+) False LOC110527289
TU654524 other downstream 875336 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 1002733 11003504 ~ 11076001 (+) True G574122
TU654699 other downstream 1100774 11101545 ~ 11102286 (+) True G574194

Expression Profile