RNA id: TU654085



Basic Information


Item Value
RNA id TU654085
length 239
lncRNA type intronic
GC content 0.38
exon number 2
gene id G573651
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 10717326 ~ 10718266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acagtagtagaggtgttatcactatgtacagtagtagaggtgttatcaccatgtacagtagtagaggtgttatcactctggacagtagtagaggtgttatcactctggacagtaatagaggtgttatcactatgaacagtaatagaggtgttatcactatgaacagtagtagaggtgttatcactatgaacagtagtagaggtgttatcactatgaacagtagtagaggtgttatcact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU654083 lncRNA upstream 207 10716716 ~ 10717119 (+) True G573650
TU654069 lncRNA upstream 26934 10690138 ~ 10690392 (+) True G573636
TU654063 lncRNA upstream 35189 10681815 ~ 10682137 (+) True G573630
TU654051 lncRNA upstream 36407 10679006 ~ 10680919 (+) True G573620
TU654040 lncRNA upstream 71735 10642123 ~ 10645591 (+) True G573610
TU654523 lncRNA downstream 158501 10876767 ~ 10877184 (+) True G574038
TU654536 lncRNA downstream 176094 10894360 ~ 10894671 (+) True LOC110527185
TU654544 lncRNA downstream 188928 10907194 ~ 10907414 (+) True G574049
TU654548 lncRNA downstream 196928 10915194 ~ 10915592 (+) True G574053
TU654551 lncRNA downstream 199695 10917961 ~ 10918353 (+) True G574056
XM_036982513.1 mRNA upstream 185450 10496574 ~ 10531876 (+) False LOC110527193
XM_021608322.2 mRNA downstream 87686 10805952 ~ 10894668 (+) False LOC110527185
XM_021608323.2 mRNA downstream 87686 10805952 ~ 10894668 (+) False LOC110527185
XM_036982524.1 mRNA downstream 101842 10820108 ~ 10894668 (+) False LOC110527185
XM_021608324.2 mRNA downstream 164197 10882463 ~ 10894668 (+) False LOC110527185
XM_021608321.2 mRNA downstream 181889 10900155 ~ 10905709 (+) False LOC110527184
TU653759 other upstream 537491 10179419 ~ 10179835 (+) False LOC110527289
TU653729 other upstream 585310 10128121 ~ 10132016 (+) True G573366
TU653149 other upstream 742198 9966667 ~ 9975128 (+) True LOC110497049
TU652657 other upstream 1783448 8931993 ~ 8933878 (+) False G572449
TU654524 other downstream 157841 10876107 ~ 10877184 (+) False G574038
TU654622 other downstream 285238 11003504 ~ 11076001 (+) True G574122
TU654699 other downstream 383279 11101545 ~ 11102286 (+) True G574194
TU654755 other downstream 460530 11178796 ~ 11197247 (+) True G574244
TU654811 other downstream 531833 11250099 ~ 11250780 (+) True G574284

Expression Profile