RNA id: TU655341


Basic Information

Item Value
RNA id TU655341
length 1801
RNA type TUCP
GC content 0.47
exon number 3
gene id G574754
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 11485253 ~ 11488504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTACTTGTGTCAAAGTGCCACCTAGTGGACTTGACCTGAACCTGCGTGTGTGTAGCCCACTCACGTCCAGCAGTGTGTGTAGGTGTTGGTCCTGGAAGACGCTGTGTAAGAAGTCCAGATCTTTCTCACTGCAGTCGGTCAGAGCATGAATCTCCTCCAGGCTGTCCAGCACCTGGGACActgcccctacacacacacacacacaaccacaggtTATAACAtatacacacgcaaacacacaccaaTTGTAAGCAGCCAGTACCataaaaacacaaacatttagatttaacacacacaaaaaacacacaacaaggacaaacacatttacagacaccgcacacacacacacacgcacacacacacagagacaccgcgcacacatacacacagagacactacgcacacacacaaagagtgcgcacacacacagagacagagcgcgcacacacacacacacagagagagacagcgcacgcgcacacacacacacacagagacagcgcacacacacacacacagagccaccgcgcacacacacacacagacacaccgcacacagacagagacagagacaccgcACACACAGCTAGAAACAGAAGGTGTCAGACTAGAGTACCTGCTACATGCAGCAAAAGCAACAGAGAgacgcagaacagaacagaacaggtatGTCCCATCATCAATATGACAGATTAGACAGAAAGGAAGAATAAACCATATCACATGGGATGGAGATAATGGTATGGAGGTCAGGTCATGTGATTGGTTAGTTCAGGTTAGTGAAGGTTAGTGAAGGCTGGATCTAGAGATTGTATGGAAGACTAGAGTTAGTTGCCATGCTGCTTGTATAACATAGAAAAACACTTCACACATAACAAGAGGTTTGAAGACTGAACACTCAGTTTGTCCTCCAAGGCCATGACAGGTCCAGATTGCACACGCCACTGACAACGGTTGTGATTGGATCAAATGGAAGCCGTGCAGGCGCGCGTCCACCTCATTAGCTGTCGGTGGTGAGTGACATCACAATGCACACAGAGTCTACTTCCCAATACTTCTGATTGGCTTTCTGTCCATCTCAGCTTGGAGTTCAATTCACCCCAATCCACTGACACCGAGTCAGATACTGTTTCAAATAGGTAAGGAAGCTGTTTTAGAGTATTGGGACGTGAGTCATCAAGGGTGCtacgagggaggggggagggtagtTTAATAGATGGtgatgatgtcatgatgtcacaCCAGGAAGCTACCTGGGGATACCTACTTTCAGCGGCTAGCAGTCCTACAGAGAGCGCCGCATTGAAACACCACCACAGAGAAGACAATAGAGAGGAAAGATTCAGcagacaagagaaagagaggaaagattcagcagacaagagaaagagaggaaagattcagcagacaagagaaagagaggaaagattcagcagacaagagaaagagaggaaagattcagcagacaagagaaagagagaaaagaggaggccAGGAAgaatgaaagacagacagacagagagacagagagacagagagacagagagtaagcaAAAGGCAGAGGCTGTGTTGACTCTAGAAGAGTCTGGAGCTGTAGGTATCTGGCTAAAGTCTCAAAGATGCCATTTGGAGGAAAATAGGTAATTTACTCGTACACtgctctgccccctcctctccaacacacacagccacaccccACAGGAAAGTGAATTCCAACCCTAagcattttctttttttaaacaaggGCAGAAAGTCACAAAACGCAGAGTGATGCAATGAGGCTGTCTGGTCTCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU655310 lncRNA upstream 50416 11433724 ~ 11434837 (+) True G574726
TU654615 lncRNA upstream 55308 11429221 ~ 11429945 (+) True LOC110495463
TU654616 lncRNA upstream 57115 11427156 ~ 11428138 (+) False LOC110495463
TU654921 lncRNA upstream 59547 11425309 ~ 11425706 (+) True G574387
TU654906 lncRNA upstream 88698 11396297 ~ 11396555 (+) True G574376
TU655383 lncRNA downstream 90646 11579150 ~ 11583219 (+) True G574788
TU655385 lncRNA downstream 95896 11584400 ~ 11584603 (+) True G574790
TU655386 lncRNA downstream 96368 11584872 ~ 11585661 (+) True G574791
TU655387 lncRNA downstream 126770 11615274 ~ 11616572 (+) True G574792
TU655404 lncRNA downstream 159691 11648195 ~ 11648469 (+) True G574809
XM_036982526.1 mRNA upstream 55145 11016278 ~ 11430108 (+) False LOC110495463
XM_036982527.1 mRNA upstream 55145 11016278 ~ 11430108 (+) False LOC110495463
XM_036982528.1 mRNA upstream 55145 11016278 ~ 11430108 (+) False LOC110495463
XM_021608321.2 mRNA upstream 579544 10900155 ~ 10905709 (+) False LOC110527184
XM_036982552.1 mRNA downstream 8049 11496553 ~ 11498867 (+) False LOC118965246
XM_021610962.2 mRNA downstream 48402 11536906 ~ 11628121 (+) False LOC110528830
XM_021610963.2 mRNA downstream 48402 11536906 ~ 11628121 (+) True LOC110528830
XM_021570748.2 mRNA downstream 255450 11743954 ~ 11750311 (+) False LOC110495474
XM_021570747.2 mRNA downstream 268227 11756731 ~ 11764384 (+) False LOC110495473
TU654876 other upstream 135400 11349349 ~ 11349853 (+) True G574348
TU654811 other upstream 234473 11250099 ~ 11250780 (+) True G574284
TU654755 other upstream 288006 11178796 ~ 11197247 (+) True G574244
TU654699 other upstream 382967 11101545 ~ 11102286 (+) True G574194
TU654622 other upstream 409252 11003504 ~ 11076001 (+) True G574122
TU655347 other downstream 8411 11496915 ~ 11497916 (+) True LOC118965246
TU655701 other downstream 255502 11744006 ~ 11745659 (+) False LOC110495474
TU655704 other downstream 259827 11748331 ~ 11750155 (+) True LOC110495474
TU655758 other downstream 341480 11829984 ~ 11835315 (+) True LOC110497002
TU656360 other downstream 975748 12464252 ~ 12468751 (+) True LOC110528829

Expression Profile