RNA id: TU655386


Basic Information

Item Value
RNA id TU655386
length 790
lncRNA type intronic
GC content 0.52
exon number 1
gene id G574791
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 11584872 ~ 11585661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgagcctgttgtcgggaccgacctgtttcacatggtaaaggaggctagtggtgtttgagcctgttgtcgggaccgtcctgttccacatggtaaaggaggttagtggtgtttgagcctgttgtcgggaccggcctgtttcacatggtaaaggaggttagtggtgtttgagcctgttgtcgggaccgtactgttccacatggtaaaggaggttagtggtgtttgagcctgttggagggaccagcctgttccacatggtaaaggaggctagtggtgtttgagcctgttggagggaccgacctgtttcacatggtaaaggaggttagtggtgtttgagcctgttgtcgggaccgacctgtttcacatggtaaaggaggctagtggtgtttgagcctgttgtcgggaccgtcctgttccacatggtaaaggaggttagtggtgtttgagcctgttgtcgggaccggcctgtttcacatggtaaaggaggttattggtgtttgagcctgttgtcgggaccgtactgttccacatggtaaaggaggttagtggtgtttgagcctgttggagggaccagcctgttccacatggtaaaggaggctagtggtgtttgagcctgttggagggaccgacctgtttcacatggtaaaggaggttagtggtgtttgagcctgttggagggaccagcctgtttcacatggtaaaggaggttagtggtgtttgagcctgttgtcgggaccggcctgtttcacatggtaaaggaggttagtggtgtttgagcctgttgtcggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU655385 lncRNA upstream 269 11584400 ~ 11584603 (+) True G574790
TU655383 lncRNA upstream 1653 11579150 ~ 11583219 (+) True G574788
TU655310 lncRNA upstream 150035 11433724 ~ 11434837 (+) True G574726
TU654615 lncRNA upstream 154927 11429221 ~ 11429945 (+) True LOC110495463
TU654616 lncRNA upstream 156734 11427156 ~ 11428138 (+) False LOC110495463
TU655387 lncRNA downstream 29613 11615274 ~ 11616572 (+) True G574792
TU655404 lncRNA downstream 62534 11648195 ~ 11648469 (+) True G574809
TU655408 lncRNA downstream 66358 11652019 ~ 11676476 (+) False G574812
TU655407 lncRNA downstream 87497 11673158 ~ 11676476 (+) False G574812
TU655409 lncRNA downstream 87497 11673158 ~ 11676476 (+) True G574812
XM_036982552.1 mRNA upstream 86005 11496553 ~ 11498867 (+) False LOC118965246
XM_036982526.1 mRNA upstream 154764 11016278 ~ 11430108 (+) False LOC110495463
XM_036982527.1 mRNA upstream 154764 11016278 ~ 11430108 (+) False LOC110495463
XM_036982528.1 mRNA upstream 154764 11016278 ~ 11430108 (+) False LOC110495463
XM_036982525.1 mRNA upstream 679163 10900157 ~ 10905709 (+) True LOC110527184
XM_021570748.2 mRNA downstream 158293 11743954 ~ 11750311 (+) False LOC110495474
XM_021570747.2 mRNA downstream 171070 11756731 ~ 11764384 (+) False LOC110495473
XM_036982556.1 mRNA downstream 188801 11774462 ~ 11776663 (+) True LOC118965247
XM_036984405.1 mRNA downstream 240841 11826502 ~ 11836170 (+) False LOC110497002
XM_036982557.1 mRNA downstream 275507 11861168 ~ 12118392 (+) False LOC110528828
TU655347 other upstream 86956 11496915 ~ 11497916 (+) True LOC118965246
TU655340 other upstream 96368 11485253 ~ 11488504 (+) False G574754
TU655341 other upstream 96368 11485253 ~ 11488504 (+) True G574754
TU654876 other upstream 235019 11349349 ~ 11349853 (+) True G574348
TU654811 other upstream 334092 11250099 ~ 11250780 (+) True G574284
TU655701 other downstream 158345 11744006 ~ 11745659 (+) False LOC110495474
TU655704 other downstream 162670 11748331 ~ 11750155 (+) True LOC110495474
TU655758 other downstream 244323 11829984 ~ 11835315 (+) True LOC110497002
TU656360 other downstream 878591 12464252 ~ 12468751 (+) True LOC110528829
TU656570 other downstream 956356 12542017 ~ 12542481 (+) True G575758

Expression Profile