RNA id: TU655404


Basic Information

Item Value
RNA id TU655404
length 275
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G574809
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 11648195 ~ 11648469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTGGAACACTCATCTTGCTGGGTGTGCTGGAACAATCATCCTGCTGTAACACTCATCCTGCTGGGTGCGCTGGAACATTCATCCTGCTGGAACACTCATCCTGCTGGGTGCGCTGGAACATTCATCCTGCTGGAACACTCATCCTGCTGGGTGCGCTGGAACATTCATCCTGCTGGAACACTCATCCTGCTGGGTGAGCTGGAACATTCATCCTGCTGGGTGCGCTGGAACATTCATCCTGCTGGAACACTCATCCTGCTGGGTGCGCTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU655387 lncRNA upstream 31623 11615274 ~ 11616572 (+) True G574792
TU655386 lncRNA upstream 62534 11584872 ~ 11585661 (+) True G574791
TU655385 lncRNA upstream 63592 11584400 ~ 11584603 (+) True G574790
TU655383 lncRNA upstream 64976 11579150 ~ 11583219 (+) True G574788
TU655310 lncRNA upstream 213358 11433724 ~ 11434837 (+) True G574726
TU655408 lncRNA downstream 3550 11652019 ~ 11676476 (+) False G574812
TU655407 lncRNA downstream 24689 11673158 ~ 11676476 (+) False G574812
TU655409 lncRNA downstream 24689 11673158 ~ 11676476 (+) True G574812
TU655441 lncRNA downstream 46808 11695277 ~ 11697631 (+) True G574834
TU655463 lncRNA downstream 80152 11728621 ~ 11728988 (+) True G574853
XM_021610962.2 mRNA upstream 20074 11536906 ~ 11628121 (+) False LOC110528830
XM_021610963.2 mRNA upstream 20074 11536906 ~ 11628121 (+) True LOC110528830
XM_036982552.1 mRNA upstream 149328 11496553 ~ 11498867 (+) False LOC118965246
XM_036982526.1 mRNA upstream 218087 11016278 ~ 11430108 (+) False LOC110495463
XM_036982527.1 mRNA upstream 218087 11016278 ~ 11430108 (+) False LOC110495463
XM_021570748.2 mRNA downstream 95485 11743954 ~ 11750311 (+) False LOC110495474
XM_021570747.2 mRNA downstream 108262 11756731 ~ 11764384 (+) False LOC110495473
XM_036982556.1 mRNA downstream 125993 11774462 ~ 11776663 (+) True LOC118965247
XM_036984405.1 mRNA downstream 178033 11826502 ~ 11836170 (+) False LOC110497002
XM_036982557.1 mRNA downstream 212699 11861168 ~ 12118392 (+) False LOC110528828
TU655347 other upstream 150279 11496915 ~ 11497916 (+) True LOC118965246
TU655340 other upstream 159691 11485253 ~ 11488504 (+) False G574754
TU655341 other upstream 159691 11485253 ~ 11488504 (+) True G574754
TU654876 other upstream 298342 11349349 ~ 11349853 (+) True G574348
TU654811 other upstream 397415 11250099 ~ 11250780 (+) True G574284
TU655701 other downstream 95537 11744006 ~ 11745659 (+) False LOC110495474
TU655704 other downstream 99862 11748331 ~ 11750155 (+) True LOC110495474
TU655758 other downstream 181515 11829984 ~ 11835315 (+) True LOC110497002
TU656360 other downstream 815783 12464252 ~ 12468751 (+) True LOC110528829
TU656570 other downstream 893548 12542017 ~ 12542481 (+) True G575758

Expression Profile