RNA id: TU656032


Basic Information

Item Value
RNA id TU656032
length 213
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G575276
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12205593 ~ 12205805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCATTCCTTCCATGTCCATTGACACTTAATGAAAGCCCTGCCCAGAGTCTGCATGCCATTCCCTACCTGGTGGGCGCTGTGTATGTTGCCTATTGATCAGCTGGGGCCAGGCGCTGAGGTGTCGTGCTTACATACCAAACAAGCTCCCATTAACCCGTCCAGTGAGTGCTGTGGTTGCCCGGGAGACTAATTGCTGTTTATTTAAGGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656031 lncRNA upstream 63 12205331 ~ 12205530 (+) True G575275
TU656021 lncRNA upstream 14346 12187908 ~ 12191247 (+) True G575265
TU655984 lncRNA upstream 85808 12118873 ~ 12119785 (+) True G575232
TU655862 lncRNA upstream 132819 11997304 ~ 12072774 (+) True G575134
TU655928 lncRNA upstream 215126 11990143 ~ 11990467 (+) True G575184
TU656024 lncRNA downstream 6927 12212732 ~ 12212997 (+) True G575268
TU656022 lncRNA downstream 50012 12255817 ~ 12256096 (+) True LOC110528831
TU656265 lncRNA downstream 51687 12257492 ~ 12257945 (+) True G575489
TU656319 lncRNA downstream 100231 12306036 ~ 12311314 (+) True G575533
TU656344 lncRNA downstream 174118 12379923 ~ 12382780 (+) True G575557
XM_021611004.2 mRNA upstream 18220 12179637 ~ 12187373 (+) True LOC110528845
XM_036982560.1 mRNA upstream 87201 11861169 ~ 12118392 (+) False LOC110528828
XR_005052504.1 mRNA downstream 7333 12213138 ~ 12245387 (+) False LOC110528831
XM_036982563.1 mRNA downstream 7334 12213139 ~ 12256113 (+) False LOC110528831
XM_036982564.1 mRNA downstream 7334 12213139 ~ 12256113 (+) False LOC110528831
XM_021610974.2 mRNA downstream 54139 12259944 ~ 12275532 (+) True LOC110528835
XM_036982573.1 mRNA downstream 81783 12287588 ~ 12350020 (+) False LOC110528723
TU655758 other upstream 370278 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 455438 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 459934 11744006 ~ 11745659 (+) False LOC110495474
TU655347 other upstream 707677 11496915 ~ 11497916 (+) True LOC118965246
TU655341 other upstream 717089 11485253 ~ 11488504 (+) True G574754
TU656360 other downstream 258447 12464252 ~ 12468751 (+) True LOC110528829
TU656570 other downstream 336212 12542017 ~ 12542481 (+) True G575758
TU657066 other downstream 966979 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 967507 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 1280711 13486516 ~ 13489737 (+) True G576241

Expression Profile