RNA id: TU656570


Basic Information

Item Value
RNA id TU656570
length 465
RNA type TUCP
GC content 0.55
exon number 1
gene id G575758
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12542017 ~ 12542481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatcatctacaccaccctccatagcatgactaggcccagaatcatctacaccaccctccatagcatgactaggcccagaatcatctacaccaccctccatagcatgactaggcccagaatcatctacaccaccctccatagcataactaggcccagaatcatctacaccaccctccatagcataaCTAGGCCCAGCCTAAGCTatcccaccatctctagcctgactaggcccagcctcatctacaccaccatccatagcccgactagacccagcctcagctaccccaccatctctagcctgactagacccagcctcagctaccccaccatctctagcctgactagacccagcctccgctacaccaccatccatagcctgactagacccagcctcagctacaccaccttccctggcatgactaggcccagcttCTGCTGTCTGCATCTCCTTACCCCCTGCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656564 lncRNA upstream 15487 12526228 ~ 12526530 (+) True G575752
TU656419 lncRNA upstream 57353 12483954 ~ 12484664 (+) True G575619
TU656417 lncRNA upstream 60685 12480402 ~ 12481332 (+) False G575618
TU656418 lncRNA upstream 60685 12480623 ~ 12481332 (+) True G575618
TU656416 lncRNA upstream 60878 12480344 ~ 12481139 (+) False G575618
TU656587 lncRNA downstream 8342 12550823 ~ 12552425 (+) True G575767
TU656632 lncRNA downstream 52697 12595178 ~ 12595925 (+) True G575804
TU656633 lncRNA downstream 53501 12595982 ~ 12596239 (+) True G575805
TU656636 lncRNA downstream 55790 12598271 ~ 12598499 (+) True G575808
TU656637 lncRNA downstream 57988 12600469 ~ 12601529 (+) True G575809
XM_021610977.2 mRNA upstream 21354 12487901 ~ 12520663 (+) False LOC110528838
XM_036982582.1 mRNA upstream 21354 12502356 ~ 12520663 (+) False LOC110528838
XM_036982583.1 mRNA upstream 21354 12503597 ~ 12520663 (+) False LOC110528838
XM_036982584.1 mRNA upstream 21354 12504126 ~ 12520663 (+) False LOC110528838
XM_036982588.1 mRNA upstream 21354 12504127 ~ 12520663 (+) False LOC110528838
XM_021608495.2 mRNA downstream 6720 12549201 ~ 12556506 (+) False LOC110527307
XM_036982610.1 mRNA downstream 7019 12549500 ~ 12556506 (+) True LOC110527307
LOC110527093 mRNA downstream 25695 12568176 ~ 12568569 (+) True LOC110527093
XM_021608496.2 mRNA downstream 43075 12585556 ~ 12594004 (+) True LOC110527308
XM_021608500.2 mRNA downstream 78382 12620863 ~ 12693768 (+) False LOC110527311
TU656360 other upstream 73266 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 706702 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 791862 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 796358 11744006 ~ 11745659 (+) False LOC110495474
TU655347 other upstream 1044101 11496915 ~ 11497916 (+) True LOC118965246
TU657066 other downstream 630303 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 630831 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 944035 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1572855 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1603589 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile