RNA id: TU656978


Basic Information

Item Value
RNA id TU656978
length 309
lncRNA type intronic
GC content 0.50
exon number 1
gene id G576085
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12965112 ~ 12965420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcattcatactgcctctgatctggaggactcactaaacagagaacatccctggtcatcactactgcctctgatctggaggactcactaaacagagaacatccctggtcatctccactgcctctgatctggcggactcactaaacagagaacatccctggtcattcctactgcctctgatctggtggactcactaaacagagaacatccctggtcatctctactgcctctgatctggcaggctcactaaacacacatgctttgtttgtaaatgatgtctgagtgttgaagtgtgcccctggccCCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656977 lncRNA upstream 372 12964185 ~ 12964740 (+) True G576084
TU656975 lncRNA upstream 1507 12962820 ~ 12963605 (+) True G576083
TU656973 lncRNA upstream 3736 12961155 ~ 12961376 (+) True G576081
TU656970 lncRNA upstream 7178 12956795 ~ 12957934 (+) True G576078
TU656969 lncRNA upstream 8593 12956253 ~ 12956519 (+) True G576077
TU656979 lncRNA downstream 1480 12966900 ~ 12967499 (+) True G576086
TU656980 lncRNA downstream 3294 12968714 ~ 12968987 (+) True G576087
TU656987 lncRNA downstream 65314 13030734 ~ 13030969 (+) True G576094
TU656991 lncRNA downstream 67899 13033319 ~ 13034731 (+) False G576096
TU656989 lncRNA downstream 68015 13033435 ~ 13034590 (+) False G576096
XM_036982615.1 mRNA upstream 52791 12900600 ~ 12912321 (+) True LOC110527322
XR_002474121.2 mRNA upstream 53857 12900600 ~ 12911255 (+) False LOC110527322
XR_005052508.1 mRNA upstream 54351 12900599 ~ 12910761 (+) False LOC110527322
XM_021608518.2 mRNA upstream 64935 12892819 ~ 12900177 (+) True LOC110527323
XM_036982614.1 mRNA upstream 78326 12878203 ~ 12886786 (+) True LOC110528756
XM_021608525.2 mRNA downstream 90037 13055457 ~ 13058826 (+) True LOC110527327
XM_021608527.2 mRNA downstream 110560 13075980 ~ 13090351 (+) False LOC110527329
XM_021608528.2 mRNA downstream 119826 13085246 ~ 13090351 (+) True LOC110527329
XM_036981849.1 mRNA downstream 151733 13117153 ~ 13130917 (+) False LOC100136184
XM_036981850.1 mRNA downstream 151733 13117153 ~ 13130917 (+) False LOC100136184
TU656570 other upstream 422631 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 496361 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1129797 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1214957 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 1219453 11744006 ~ 11745659 (+) False LOC110495474
TU657066 other downstream 207364 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 207892 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 521096 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1149916 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1180650 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile