RNA id: TU656989


Basic Information

Item Value
RNA id TU656989
length 1156
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G576096
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13033319 ~ 13034731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTGGCAGAGCTGAAGACAGCATCGGTCCGGTCCGGGACCCAACGTTCTGCTGCTGCCCAGCCAACATAGCCGACCAATAGGAGGCCAGGTAAGCTGTCTCATATGACCCGATTCAACAGAGTTCACTTGACTTCTTCCTTTTAGAGCGAGGGCCATCCTTCAACCAATAGACAGGCTCAATTACTCAATTACTATTGCAACTGTTACTGTGTTTTCAACAGGGATCACATTAGGCGATACACACAAGATATGTTGGGAAAAAAGAAAGGTACAAGGACAAGTCAGAGAAGGGTTCTAGGTCTTAGAGAcagtattttttttgggggggggcttcCTTTAATGCCTTTGACTCCCTCCCTGACCGACTTCAGACACTATGAttagagtacagtatattgttGTAGTAGTGCATTATTGCAGGGCGTGTGTCAGACATACAGtcctgacacacagacagagagtgagtgagtaagttTAGAGAGTTGCTGGGTGTTAATTGAGGTACTTGATCTGAATCCAATAGTGTCTGATGCTGCGAGCTGACAGACTAAAAGGGTTGTGAAatcaacatcacacacacacacacacactgtagttacCCTGCAATTAACAAGCTGTGTCTGGGCAACCCGATACACACTGACTaagtacagagggaggagggtgtgAAAGAaagtgaggaagagaagagaagaggggacaagagaggtagggtagagagtgagtggtaAAGGGAGAGAAATGGGGAAGAAGGGTTGGTTACCTGGGTAACCTggttcctctattctctcctcctcccactttCTCTTTTTACTTGTCCTCTCATCTTCCtttctcccctcctgtcctctctcctctcatcctcctatcttcccctgtcctctcatcctcctctctccccctgtcctctcatcctcctctctccccctgtcctctcatcctcctctctccccctgtcctctcatcctcctctctccccctgtcctctcctcctcctctctccccctgtcctctctttcccctctatttcccactctcctccactctctcctttctattcatctcctctttcacctcccctctcctcctctcctccctctccttaacTCTTGCaggtgttatctctctctcttaagcGGAGGCAATTACCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656987 lncRNA upstream 2466 13030734 ~ 13030969 (+) True G576094
TU656980 lncRNA upstream 64448 12968714 ~ 12968987 (+) True G576087
TU656979 lncRNA upstream 65936 12966900 ~ 12967499 (+) True G576086
TU656978 lncRNA upstream 68015 12965112 ~ 12965420 (+) True G576085
TU656977 lncRNA upstream 68695 12964185 ~ 12964740 (+) True G576084
TU656993 lncRNA downstream 3283 13037873 ~ 13038767 (+) False G576097
TU656995 lncRNA downstream 3283 13037873 ~ 13039421 (+) False G576097
TU656997 lncRNA downstream 3283 13037873 ~ 13038499 (+) False G576097
TU656996 lncRNA downstream 3567 13038157 ~ 13038767 (+) False G576097
TU656998 lncRNA downstream 3567 13038157 ~ 13038499 (+) True G576097
XM_036982615.1 mRNA upstream 121114 12900600 ~ 12912321 (+) True LOC110527322
XR_002474121.2 mRNA upstream 122180 12900600 ~ 12911255 (+) False LOC110527322
XR_005052508.1 mRNA upstream 122674 12900599 ~ 12910761 (+) False LOC110527322
XM_021608518.2 mRNA upstream 133258 12892819 ~ 12900177 (+) True LOC110527323
XM_036982614.1 mRNA upstream 146649 12878203 ~ 12886786 (+) True LOC110528756
XM_021608525.2 mRNA downstream 20867 13055457 ~ 13058826 (+) True LOC110527327
XM_021608527.2 mRNA downstream 41390 13075980 ~ 13090351 (+) False LOC110527329
XM_021608528.2 mRNA downstream 50656 13085246 ~ 13090351 (+) True LOC110527329
XM_036981849.1 mRNA downstream 82563 13117153 ~ 13130917 (+) False LOC100136184
XM_036981850.1 mRNA downstream 82563 13117153 ~ 13130917 (+) False LOC100136184
TU656570 other upstream 490954 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 564684 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1198120 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1283280 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 1287776 11744006 ~ 11745659 (+) False LOC110495474
TU657066 other downstream 138194 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 138722 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 451926 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1080746 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1111480 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile