RNA id: TU656993


Basic Information

Item Value
RNA id TU656993
length 895
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G576097
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13037873 ~ 13039421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaggtggtGGGGTTGagggctagatgaaggtggtagggttcagggttagggctagatgaaggtggttagggttcagggttagggctagatgaaggtggtagggttcagggttagggctagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggtacagggttagggctagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggtacagggttagggttagatgaaggtggtagggttcagggttagggttagatgaaggtggtagggttcagggttagggctagatgaaggtggtagggttcaaGGTTAAGGCTGTTGGGGATATGATGAGTTAAAAGCCCATACCCAAGAATCCATGACAGATTAGCTCATGTACTCAACGTTGATCAATAAACTTGATAGTGTCGAAATGAACCTTGTAATGGATGGGCGTGAGCTGGCACTAACAGATATCTGTGTGCGGTACAATGACACGATTCAGGGACACTAGGAAATGCTTATTGTAAAAACCAATCAATGAAAACTGCAACCTTTTCATATGGATAGCTGTTCCCTAGCCCAAATCATGATGTCACTGCACTCAGTTCGGACTTTGCACTTGAAGCTTTATCTTTTATCTGTGAGTTGTACTTGAAGTTCTGTTGAGTCAAGACTCACCCACTGAcatgtctgtttgcctgtctggCTGTCCGTCTGTATTTCTAGAAAGCCTGGAGGAGATTTTTCTTTAATGGATGAGGGAAGGGACCGTTCTCTCCAGAGGAGTTGCTTGGATGGACAAGACGGAGACATAAAGGTGATTGGAGGGATTAGAGAAAGAGAGCTTCTGATTGGACAAAGAGATTCTGACCTCCCACCTTCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656991 lncRNA upstream 3142 13033319 ~ 13034731 (+) False G576096
TU656990 lncRNA upstream 3142 13033435 ~ 13034731 (+) True G576096
TU656989 lncRNA upstream 3283 13033435 ~ 13034590 (+) False G576096
TU656987 lncRNA upstream 6904 13030734 ~ 13030969 (+) True G576094
TU656980 lncRNA upstream 68886 12968714 ~ 12968987 (+) True G576087
TU657009 lncRNA downstream 8814 13047581 ~ 13047805 (+) True G576106
TU657010 lncRNA downstream 11174 13049941 ~ 13050159 (+) True G576107
TU657012 lncRNA downstream 14093 13052860 ~ 13053184 (+) True G576109
TU657094 lncRNA downstream 152230 13190997 ~ 13198522 (+) False G576173
TU657095 lncRNA downstream 158645 13197412 ~ 13212227 (+) True G576173
XM_036982615.1 mRNA upstream 125552 12900600 ~ 12912321 (+) True LOC110527322
XR_002474121.2 mRNA upstream 126618 12900600 ~ 12911255 (+) False LOC110527322
XR_005052508.1 mRNA upstream 127112 12900599 ~ 12910761 (+) False LOC110527322
XM_021608518.2 mRNA upstream 137696 12892819 ~ 12900177 (+) True LOC110527323
XM_036982614.1 mRNA upstream 151087 12878203 ~ 12886786 (+) True LOC110528756
XM_021608525.2 mRNA downstream 16690 13055457 ~ 13058826 (+) True LOC110527327
XM_021608527.2 mRNA downstream 37213 13075980 ~ 13090351 (+) False LOC110527329
XM_021608528.2 mRNA downstream 46479 13085246 ~ 13090351 (+) True LOC110527329
XM_036981849.1 mRNA downstream 78386 13117153 ~ 13130917 (+) False LOC100136184
XM_036981850.1 mRNA downstream 78386 13117153 ~ 13130917 (+) False LOC100136184
TU656570 other upstream 495392 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 569122 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1202558 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1287718 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 1292214 11744006 ~ 11745659 (+) False LOC110495474
TU657066 other downstream 134017 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 134545 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 447749 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1076569 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1107303 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile