RNA id: TU657009


Basic Information

Item Value
RNA id TU657009
length 225
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G576106
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13047581 ~ 13047805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctatctatctatctatctatctatctatctatctatctatctatctatctatctatcatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU656995 lncRNA upstream 8160 13037873 ~ 13039421 (+) False G576097
TU656993 lncRNA upstream 8814 13037873 ~ 13038767 (+) False G576097
TU656996 lncRNA upstream 8814 13038157 ~ 13038767 (+) False G576097
TU656997 lncRNA upstream 9082 13037873 ~ 13038499 (+) False G576097
TU656998 lncRNA upstream 9082 13038157 ~ 13038499 (+) True G576097
TU657010 lncRNA downstream 2136 13049941 ~ 13050159 (+) True G576107
TU657012 lncRNA downstream 5055 13052860 ~ 13053184 (+) True G576109
TU657094 lncRNA downstream 143192 13190997 ~ 13198522 (+) False G576173
TU657095 lncRNA downstream 149607 13197412 ~ 13212227 (+) True G576173
TU657084 lncRNA downstream 152686 13200491 ~ 13301417 (+) False G576172
XM_036982615.1 mRNA upstream 135260 12900600 ~ 12912321 (+) True LOC110527322
XR_002474121.2 mRNA upstream 136326 12900600 ~ 12911255 (+) False LOC110527322
XR_005052508.1 mRNA upstream 136820 12900599 ~ 12910761 (+) False LOC110527322
XM_021608518.2 mRNA upstream 147404 12892819 ~ 12900177 (+) True LOC110527323
XM_036982614.1 mRNA upstream 160795 12878203 ~ 12886786 (+) True LOC110528756
XM_021608525.2 mRNA downstream 7652 13055457 ~ 13058826 (+) True LOC110527327
XM_021608527.2 mRNA downstream 28175 13075980 ~ 13090351 (+) False LOC110527329
XM_021608528.2 mRNA downstream 37441 13085246 ~ 13090351 (+) True LOC110527329
XM_036981849.1 mRNA downstream 69348 13117153 ~ 13130917 (+) False LOC100136184
XM_036981850.1 mRNA downstream 69348 13117153 ~ 13130917 (+) False LOC100136184
TU656570 other upstream 505100 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 578830 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1212266 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1297426 11748331 ~ 11750155 (+) True LOC110495474
TU655701 other upstream 1301922 11744006 ~ 11745659 (+) False LOC110495474
TU657066 other downstream 124979 13172784 ~ 13173074 (+) True G576160
TU657068 other downstream 125507 13173312 ~ 13207489 (+) True G576161
TU657184 other downstream 438711 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 1067531 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 1098265 14146070 ~ 14152624 (+) True LOC110527359

Expression Profile