RNA id: TU657094



Basic Information


Item Value
RNA id TU657094
length 689
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G576173
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13190997 ~ 13212227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGTCTTGTTATAAtgtaaaaaaatctaatttgTTATTACAGGATTTACACCCAGAGCCCTGAGTCTGCTAACCAGTTTGTGGGTCAGGATGGCGTTGAAAGCAGAGCTATAAAATAAAATGCACTCTGACGCATGTAAACATGTATAATTGACATTTGTTGGAACAATAGGCAAATGAGTTGTTCCAGTGAAATGTTTTGCTACTATGTGCTACACAATATCTATTGTTCCTGTTTTTTAAAATCGATATCGACTGGGCTGCAGTGAAGATGGTAAGAAGCTTCGATATCATGGAGACATAACTTCTAACGTCGTTTCCtggtacacccacacagacaaaaATGCCAACCAGCAGCTCTCCGTTTTGCCTGACGTCAAACATTAGCAAGAGTGTTGGATTGAAGTGTTGAAGAAATGTAAACAGAACCATAAGAGCAGATGACTTTTTTTTGTCATATTTACTGACACAGTTTTAAAATGTCTACTTTCAATTGATTCATTGACTCCAAGAACCATAGACGGTTTGTAGTTCATATCATTAACACAACTGACCGATGTTGCTTGACTGTAAATTGGGATACATGTTTTAATGACATTGAATATTTGATTGGGGTTAATGATACTTGATGAATCAGGTCTTCTCTGCTGCTTCATCAGCCTCCCCCTTGCCCACTCCGAGCTCCTCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU657012 lncRNA upstream 137813 13052860 ~ 13053184 (+) True G576109
TU657010 lncRNA upstream 140838 13049941 ~ 13050159 (+) True G576107
TU657009 lncRNA upstream 143192 13047581 ~ 13047805 (+) True G576106
TU656996 lncRNA upstream 152230 13038157 ~ 13038767 (+) False G576097
TU656997 lncRNA upstream 152498 13037873 ~ 13038499 (+) False G576097
TU657084 lncRNA downstream 1969 13200491 ~ 13301417 (+) False G576172
TU657087 lncRNA downstream 1969 13200491 ~ 13204307 (+) False G576172
TU657089 lncRNA downstream 1969 13200491 ~ 13203754 (+) False G576172
TU657081 lncRNA downstream 3308 13201830 ~ 13301417 (+) False G576172
TU657086 lncRNA downstream 3604 13202126 ~ 13345395 (+) False G576172
NM_001124459.1 mRNA upstream 41521 13135560 ~ 13149476 (+) True LOC100136183
XM_036981849.1 mRNA upstream 60080 13117153 ~ 13130917 (+) False LOC100136184
XM_036981850.1 mRNA upstream 60080 13117153 ~ 13130917 (+) False LOC100136184
XM_036981851.1 mRNA upstream 60080 13117153 ~ 13130917 (+) False LOC100136184
XM_036981848.1 mRNA upstream 60080 13120381 ~ 13130917 (+) False LOC100136184
XM_021608542.2 mRNA downstream 169107 13367629 ~ 13371986 (+) True LOC110527332
XM_036984406.1 mRNA downstream 173215 13371737 ~ 13421278 (+) True LOC110527334
XM_021608544.2 mRNA downstream 232001 13430523 ~ 13443490 (+) True LOC110527335
XM_021608547.2 mRNA downstream 253319 13451841 ~ 13460114 (+) False LOC110527337
XM_021608548.2 mRNA downstream 253321 13451843 ~ 13460114 (+) True LOC110527337
TU657066 other upstream 17923 13172784 ~ 13173074 (+) True G576160
TU656570 other upstream 648516 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 722246 12464252 ~ 12468751 (+) True LOC110528829
TU655758 other upstream 1355682 11829984 ~ 11835315 (+) True LOC110497002
TU655704 other upstream 1440842 11748331 ~ 11750155 (+) True LOC110495474
TU657184 other downstream 287994 13486516 ~ 13489737 (+) True G576241
TU658313 other downstream 916814 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 947548 14146070 ~ 14152624 (+) True LOC110527359
TU658406 other downstream 974001 14172523 ~ 14180064 (+) True G577261
TU658450 other downstream 1032195 14230717 ~ 14230932 (+) True LOC118965342

Expression Profile