RNA id: TU657818


Basic Information

Item Value
RNA id TU657818
length 2990
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id G576756
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13617588 ~ 13621304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACAGAGTACACTGTAAATCCTCAAACAGAACCACAAGAACCAGATTAGAACCCAAAGAACATGATTGAATAACCAAGAAGAACAGACGTGGAGTCCTAGCATCCAGTGAGACCTAGATCAGTGCATTGTGATCcgtcagaaacacagacacacagcaaccAACACGACAACACatgctacagagagagacacacagtttGCCTTACAGTAAACAAACGACCCAAATCAGTATTTTCCGGCTGTGAATATCACACAGATATTCAACAGCAAATCTCAGAGAGAAGATTTGTCTGTGATTGTGGAACAAGCCAGTGATTTGTGACTATGTGTTGGGGGGGGGACATTCTGTATGTGGAAGAAGAAGAGCAGGATCCAGGCCAACCACATAGTGCAGCAGCGTGTTCCTCCCAGACATGTTGTCACACTACCTCTCCTTTTGGCCTGTAAGAGACTAGAGGTGCTGAGCCACTTGGCCCTGCTCAGAGTGATGTGAGGAGTCTGACCAGGCTCTGAGGAGAAGAAGCAGTAGCAGTCAGCAACGTCGTCCAGATGAACGCTGTGTCTGACACTCAGGTGGCTTTGAAGTACACAGGTGTAGGTTGACTCATCCATCAAACTGTCTTACAAAGGCCTTTGAGGCCAACAAGGCATGTCATAGATTTTTCACTTGTTTAAATCAAGACATTGTTGTATGCATCTTCTGTGTCAACGATCGTCAGATTTGAATGATCTTATCTGGGTCATCTCCATGTTGCAGTCCCTCGTCAGTCCAGTGTCTTTAGCTAGACAGTACCAATGCACTCAGCGGGCCCCGGTGGCTGAATGTCTTACATTGATCTACCACAATTCATTCCCTCTCCAGTTTACTCTGCTTGCATGATGGTCACACATAGATATATTTTGGGATGATGGGGAGTTGACATGGTGCTGAGATGACTACAGTGAGGGAGGgtcaggatggatggatgactacagggagggagggtcagGGTGGCTGGATGACTACAGTGACGGAGGGTCAGGGTGGCTGGATGACTACAGTGACGGAGGGTCAGGGTGGCTGGATGACTACAGTGAGGGAGGGTCAGGGTGGCTGGATGACTACAGTGACGGAGGCTCAGGATGGATGACTACAGTGACGGAGGCTCAGGATGGACGACTACTGTGAGGCAGGGTCAGGATGGCTGGATGACtacagtgagggagggagggtcaggATGGCTGGATGACTACAGTGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGACGGAGGGTCAGGGTGGCTGGATGACTACAGTGACAGAGGCTCAGGATGGCTGGATGACTACAGTGACAGAGGCTCAGGATGGATGACTACAGTGAGGCAGGGTTAGGATGGATGACTACAGTGAGGCAGGGTCAGGAGCGCTGGATGACTACAGCGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGAGGGAGGGTCAGGATGGCTGGATGACTACAGTGAGGGAGGGTCAGGATGGCTGGATGACTACAGTGAGGCAGGATCAGGATGGCTGGATGACTACAGTGAGGCAGGgtcaggatggatggatgactaCAGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATGACTACAGTGACGGAGGCTCAGGATGGATGACTACAGTGACGGAGGgtcaggatggatggatgactaCAGTGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGAGGCAGGGTCAGGATGGCTGGATGACTACAGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATGACTACTGTGAGGGAGGGTCAGGATGGATAACTACAGTGAGGGAGGGTCAGGATGGATGACTACTGTGAGGGAGGgtcaggatggatggatgactaCAGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGGAGAgtcaggatggatggatgactaCAGTGAGGCAGGGTCAGGATGGATGACTACTGTGAGGGAGGgtcaggatggatggatgactaCTGTGAGGGAGGGTCAGGATGGATGACTACACTACAGAGTCAAACACAGGTATGACATGGACTAGATAGAATACCTTTACACCCAAAGGGAGTTGGGTCACTCTTAATCTCGTGGCTTTTGGCCTTATGGTCAGGGCTAAGGAGGGATCCTTTCTGACTCTTCAGATTGCTGAAGCCTTGAAGGGTAAAACGCTTTTTAGCCACTGATGACCTGTCAGTGGTGGGACTGGTGACTGTCTCCTCTTTGTGTTTTGGGGAGGAGGGGGAATTGGGGTCAGAGTTGACACCAtctgtcttcttctcttctcccttcttCACGCTCTTCTGACAGTTCCTAAATGGACTAAGAGGGAGAAACAAACAGGTGAAAAAGAGAAGAACCAACCATGTTGATTCCTTCTCTGTAACTGGCTCTAGCCATGGTTCTCTCTGTAAAATCTGACCTGAGACAGATAGGTGGGCTGTTGCTGGTTGGACTGGGAGACATTGTGTCTGACACCTTCTTTTGACTAGATTCTGGAACAAATCATCACAGTTactaacagaacacagacacaacaacagagAATTTAGCATCCAGATGTGTATCAACTCtggaatgtgtgtgcgtgtgtctgtaatGCCGCAGATCCCCTATCTTACCCCTGCAGGCCTTCAGCTGGCCAGTCAGAACCTTCCTGATCTCATTCAACCAAGATGTTTTGATCTCAGGTGTCGCAGCCTGGACGATAAACACCTCCTCTCTGGAATTACACCAGATCTCAAACTTCTTGTTGTCACCCTTGGCGCTCTCCGTGATGCCCACCGCACTCATCTGTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU657810 lncRNA upstream 7823 13607504 ~ 13609765 (+) True G576750
TU657786 lncRNA upstream 84520 13532681 ~ 13533068 (+) True G576727
TU657763 lncRNA upstream 93382 13523991 ~ 13524206 (+) True G576715
TU657762 lncRNA upstream 96208 13521136 ~ 13521380 (+) True LOC110528759
TU657756 lncRNA upstream 100429 13516688 ~ 13517159 (+) True G576708
TU657831 lncRNA downstream 9773 13631077 ~ 13631503 (+) True G576767
TU657834 lncRNA downstream 11564 13632868 ~ 13633486 (+) True G576770
TU657855 lncRNA downstream 63189 13684493 ~ 13686471 (+) False G576791
TU657856 lncRNA downstream 63189 13684493 ~ 13686471 (+) True G576791
TU658017 lncRNA downstream 112198 13733502 ~ 13733702 (+) True G576930
XM_021608564.2 mRNA upstream 22830 13584213 ~ 13594758 (+) True cdadc1
XM_036982663.1 mRNA upstream 33935 13574849 ~ 13583653 (+) False LOC110527343
XM_036982649.1 mRNA downstream 93347 13714651 ~ 13802058 (+) False LOC110527351
XM_036982648.1 mRNA downstream 93347 13714651 ~ 13803715 (+) False LOC110527351
XM_036982646.1 mRNA downstream 93347 13714651 ~ 13803721 (+) False LOC110527351
XM_036982643.1 mRNA downstream 93347 13714651 ~ 13806043 (+) False LOC110527351
XM_036982644.1 mRNA downstream 93347 13714651 ~ 13806043 (+) False LOC110527351
TU657184 other upstream 127851 13486516 ~ 13489737 (+) True G576241
TU657068 other upstream 410099 13173312 ~ 13207489 (+) True G576161
TU657066 other upstream 444514 13172784 ~ 13173074 (+) True G576160
TU656570 other upstream 1075107 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 1148837 12464252 ~ 12468751 (+) True LOC110528829
TU658313 other downstream 494032 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 524766 14146070 ~ 14152624 (+) True LOC110527359
TU658406 other downstream 551219 14172523 ~ 14180064 (+) True G577261
TU658450 other downstream 609413 14230717 ~ 14230932 (+) True LOC118965342
TU658765 other downstream 784792 14406096 ~ 14406598 (+) True G577561

Expression Profile