RNA id: TU657855


Basic Information

Item Value
RNA id TU657855
length 1863
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G576791
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13684493 ~ 13686471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGACTTTATTATTAAAGAGATGACAGGATGTTTGGGTCCATGGCATGACATTTCTATACATCTGTGCTATACAATGGACAGGATTTACAGACAGAGGTCTTGCAGTAGCGTCTTCTCTTGGCACGCCCTGATGAGAACTTGTGATTGGAAAGAAAGACAGGGGAGCCTGCTGGGAGAGGTTAAAACATCTCCAactctgcatctcaaatggcgcCCTATTATGTATGGTGCCCTATTATgtatggtgccatttaggacgcagaCAATAGCTTCATTGCCTCCTTTCCTTCATCCGCTCTGCTGACAggtgaatgaaagcaagtcctgGTAAGCATCTTCCATATCGCTTTCAGATCAGTGAAAAGGTTAGGGAGGCAAGGAAGCCACCTctgactattgagatgcacccgaACACTACAGTATAGTCCATCATAGGGGGGGTTTGAAAGGCTAGTTTTGTCACCATTCCACTTGTAGCTTCTTCAAGGTTTAATGTCGCACTATGACAAAAGTATTTTCCCAGGGTTGTCTGAGTGGTCAGGAGAGAAAAGTGGCATAAGTTGGGTGCAACACGTTTGACAAATCTGTCTTGTACAATTAAGGAATTGAGCTGGTTCAACATGACAGATTCACAAGCAGAACAGAGGCCACAGTCTGCAAGGAGAATCAAGAGAAACCCAgttaaataatacaaaacacCAATAAAATCCTAACGTCTGTCAGTCTTTTAGCCTTAGGGGCTGTGGGCATTGTTTTTGAATCTCTTTAGAGAGGTGGGTGGGAGCCTGCTGTGTTGGTTCCATAATACCGTTGTTAAACAGCTATAAGTGTTTATTAACAGTTATAAAACACACCGCAGACTTTAAGACACTGGTATGAAAAATAAACAAACGTCAGTAAGAAAAACTAAACAAAATATTCACAGAACATCAAAACAAACCAATCAAATCAAGACATTCTGTTCATTATCAAATGTACAATATGAAATTCACACGGTGATGGTAGCCTATCAGACACCTCAAAGAGGTGAGGGTGAACACAGCTGGAGGCTGGAGGCAGACTACTAAAATGACAGGCTTCTAAAACCACACCTCCCAAGAGGGGACTGTGAAAGAGTGGGAAACGTGGATGTGTGTATGGTGTATtgagcgtgtgtgtttgtttgtgtgagtaATTTGCCAATGACATTGGGGGAGGAGGCAGGGTTTCAAAATGTTCTGTTTGTTTATGTCATAGTGAAATGAATCCCAGTTAGCCCTATTTGTCTCGAGGTGTTAAAATGCAGGGCCAAATGGAATCTGTGAAGTCACCACTACAGCATCCTCCTATGGGTTCTCTTTccagagcccgagttcccgacttggaattccgagttggatgaccgttcaaaacgattTTTCCCAGTTAGAGCTTGTTTTTtaccgagttcccagttgttttgaacgcactgaagtcggagatttcagagttcctagttgttttgaatgcggtaTTATCTCCACCTGGCTCTATTATGATGTCATCACAACAGATTCTGTCTGGCTCTTTTGTGATGTCAATGTTCTGTCTGGttctattgtgatgtcatcacaaCAGATTCCATCTAGCCCTACTTTGATGTCATCTTCATGTCATATATAAATACTATCAAGGCAGATTCCGTGTGGCTCTCTGTCCCTATGTTGTGACATGGTGGTGTGCGTCAGGTCAGATGTTGGAGGGCCGTCGCCCCCTGGTGGCCCCCAGTGAGGCCCTCAGACGGGGGTCTCTGGCCCGGTAGTGCTCGTTGAAGTCCAGTCTGAAGCTGAGGAAGCGCAGGCTCTCGTCTGGACTAGTCATTATCAGCACCAAGAACTGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU657834 lncRNA upstream 51007 13632868 ~ 13633486 (+) True G576770
TU657831 lncRNA upstream 52990 13631077 ~ 13631503 (+) True G576767
TU657818 lncRNA upstream 63189 13617588 ~ 13621304 (+) True G576756
TU657810 lncRNA upstream 74728 13607504 ~ 13609765 (+) True G576750
TU657786 lncRNA upstream 151425 13532681 ~ 13533068 (+) True G576727
TU658017 lncRNA downstream 47031 13733502 ~ 13733702 (+) True G576930
TU658019 lncRNA downstream 48399 13734870 ~ 13735111 (+) True G576932
TU658020 lncRNA downstream 48835 13735306 ~ 13735634 (+) True G576933
TU658032 lncRNA downstream 64846 13751317 ~ 13751539 (+) True G576944
TU658037 lncRNA downstream 85275 13771746 ~ 13774732 (+) True G576949
XM_021608564.2 mRNA upstream 89735 13584213 ~ 13594758 (+) True cdadc1
XM_036982663.1 mRNA upstream 100840 13574849 ~ 13583653 (+) False LOC110527343
XM_036982649.1 mRNA downstream 28180 13714651 ~ 13802058 (+) False LOC110527351
XM_036982648.1 mRNA downstream 28180 13714651 ~ 13803715 (+) False LOC110527351
XM_036982646.1 mRNA downstream 28180 13714651 ~ 13803721 (+) False LOC110527351
XM_036982643.1 mRNA downstream 28180 13714651 ~ 13806043 (+) False LOC110527351
XM_036982644.1 mRNA downstream 28180 13714651 ~ 13806043 (+) False LOC110527351
TU657184 other upstream 194756 13486516 ~ 13489737 (+) True G576241
TU657068 other upstream 477004 13173312 ~ 13207489 (+) True G576161
TU657066 other upstream 511419 13172784 ~ 13173074 (+) True G576160
TU656570 other upstream 1142012 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 1215742 12464252 ~ 12468751 (+) True LOC110528829
TU658313 other downstream 428865 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 459599 14146070 ~ 14152624 (+) True LOC110527359
TU658406 other downstream 486052 14172523 ~ 14180064 (+) True G577261
TU658450 other downstream 544246 14230717 ~ 14230932 (+) True LOC118965342
TU658765 other downstream 719625 14406096 ~ 14406598 (+) True G577561

Expression Profile