RNA id: TU658098


Basic Information

Item Value
RNA id TU658098
length 360
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G576998
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13901452 ~ 13905811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagttgatagggctaaattataggtgggctatgtgcaggtgcagtaatctgtgagctgctctgacagttggtgcttaaagctagtgagggagataagtgtttccagtttcagagatttttgtagttcgttccagtcattggcagcagagaactggaaagcgaggcggccaaagaaagaattggttttgggggtgactagagagatatacctgcagcgtgtgctacaggtgggagatgctatggtgaccagcgagctgagataaggggggactttacctagcagggtcttgtagatgacatggagccagtgggtttggcgacgagtatgaagcgagggccagccaacgagagcgtacag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU658058 lncRNA upstream 28179 13839239 ~ 13873273 (+) False G576963
TU658059 lncRNA upstream 28179 13839239 ~ 13873273 (+) True G576963
TU658053 lncRNA upstream 69625 13831479 ~ 13831827 (+) True G576962
TU658050 lncRNA upstream 76953 13820259 ~ 13824499 (+) True G576960
TU658045 lncRNA upstream 90059 13811174 ~ 13811393 (+) True G576956
TU658100 lncRNA downstream 2985 13908796 ~ 13909470 (+) True G576999
TU658239 lncRNA downstream 8635 13914446 ~ 13914661 (+) True G577118
TU658240 lncRNA downstream 17024 13922835 ~ 13923252 (+) True G577119
TU658241 lncRNA downstream 18468 13924279 ~ 13924695 (+) True G577120
TU658244 lncRNA downstream 40107 13945918 ~ 13946252 (+) True G577123
XM_036982643.1 mRNA upstream 95409 13714651 ~ 13806043 (+) False LOC110527351
XM_036982644.1 mRNA upstream 95409 13714651 ~ 13806043 (+) False LOC110527351
XM_036982645.1 mRNA upstream 95409 13714651 ~ 13806043 (+) True LOC110527351
XM_036982646.1 mRNA upstream 97731 13714651 ~ 13803721 (+) False LOC110527351
XM_036982648.1 mRNA upstream 97737 13714651 ~ 13803715 (+) False LOC110527351
XM_036982656.1 mRNA downstream 225630 14131441 ~ 14143542 (+) False tsga10
XM_036982655.1 mRNA downstream 225633 14131444 ~ 14143542 (+) True tsga10
XM_021608580.2 mRNA downstream 240400 14146211 ~ 14159585 (+) False LOC110527359
XM_021608582.2 mRNA downstream 240400 14146211 ~ 14159585 (+) False LOC110527359
XM_021608583.2 mRNA downstream 240401 14146212 ~ 14159585 (+) False LOC110527359
TU657184 other upstream 411715 13486516 ~ 13489737 (+) True G576241
TU657068 other upstream 693963 13173312 ~ 13207489 (+) True G576161
TU657066 other upstream 728378 13172784 ~ 13173074 (+) True G576160
TU656570 other upstream 1358971 12542017 ~ 12542481 (+) True G575758
TU656360 other upstream 1432701 12464252 ~ 12468751 (+) True LOC110528829
TU658313 other downstream 209525 14115336 ~ 14116345 (+) True G577180
TU658320 other downstream 240259 14146070 ~ 14152624 (+) True LOC110527359
TU658406 other downstream 266712 14172523 ~ 14180064 (+) True G577261
TU658450 other downstream 324906 14230717 ~ 14230932 (+) True LOC118965342
TU658765 other downstream 500285 14406096 ~ 14406598 (+) True G577561

Expression Profile