RNA id: TU658406


Basic Information

Item Value
RNA id TU658406
length 6877
RNA type TUCP
GC content 0.43
exon number 5
gene id G577261
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14172523 ~ 14180064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTATTAGCGTCAGATATTGATGAAAGCTTCATCTAAAGCAACAGTCAGGCCTATACAGATATCCTCTTTGTGCAGGATACAAGATATGCTCATTACAATAGAAAGAAATACAAATCCAATCCCAACACTTATTGAATTATACCCTATAGTATATTACATAAATGCAAAATAAAGTCTGCAGATTGCAAAATATGTTTCCAATAATACTAAAAATATTTATGAGCATGAAAGACACTAGAGTAAACAATAGACTAAATGTACACAAACTGCATCTCACAGTTGAGTCTATGGGTAAATCCTGTCGTGTGCAGTACAGAAGTGCCTGTTGAAAAGCAAACATATGTGAAGCTttgctacatacacacacacatgactcaTTTGTAGGGTCAAGTCTCCTCTGGCTCAATTGTGTATCAAATTGCAATCTCATTAAATGTTGCAAAACAGAAAGACGACATTGCCACTCAGTGGTGAAAATAGACATGACAAATATGTTGTTGTTGAGCAGCACAGTTTCCAGATGAATGTACAATGTAACTCCCATACCAATAACATTCTACTGACTATTTTACCCTGGTCAACAACGCCTGCCAACAAGACAATCCTAAAATAACAGTGCAACAAATGCAGAAAATGATCTTAAAGGAAAGTGCTTCTTGGGTGTTTAACTGGTTTACTACTGGCCTTTACTTGGTTCAACATGAGAACGGAAAATAATCTACTCGATTTCCTTTACAAGTCAAtgttataatgtattatgttTCATTTATTACCCTCAAACCAAACTTTTTCCAGAAATGAACTTGGTAAGAGAGGGAAGTGGATCTTTCTAGAACATTCATAGCTTTTTAATATTCCTCTTTAAGTCTTAAAGGAAtagttcaggattttggcaatgaggccctctTTGTGCtaagctagttagcattggctcgcaaaactacctctaacttcacCCGACTCCCGGGTGAACTCGTGCCAAAAGCCCAAACTATCCTTTTAAGACAGTGCTAAGACTTCACAGTGAGCTGCCAGATAATGCCACACAGCTAAATCCATTCACAATCACACCCCTTCATTTGGCAAAGAAGTTAAACGCAGGCTTTACAGATATGAAAAGGGAAACAGGACATAGGTGAGGTACGCGTCAGACACTGAAAGCTCTGGTTGGTCTTGGGTTGCCATTGCAGTCGGTGGGATGTCTCTCTACAGGGTTTCTTAAACTATGGGTCGGGTTCCAAAGTAGGCCCTGGGCATGCAAGAGGTGGGTCGTGAGTTATGAGAATACATCTCTAATCACGCACTATTTTGTCTTCATTTGGGTCACTGGTGAACCATTTGGGTCACAGGAGGATGGTCAATTTCTTATTCAGTTCTGGAGCTGAAACCATTGAAAGAACCCCTGCACTACAGGATTAGAGTACTGCTAAATCCACGTGGGGAAGGAATCCTTCATCAAGTCCATCAGACTAGCTTGACTTCCACAATGTGTAGTCCATACGTAAAACACTCCCTAAATAAGAACTCTGAAATGCATAGGCTCTGGTCAATGATGCCAACCAAATGTACAAATCCCAGTTTACATGTTAACTATGGGTTGAGAGACACGACTTTGAACATAGTCAGCATGAAGTAGCATCGTCCCAGGATGAACGTTTGGTGACCTATAGATGGCCTGAGGCTCTGAAAATAGCTAAAAGTCATCTGTGTATAGTGGTAAAGAATCAGTGACAGTCTTTTCAGGAAACGACCTCCTTGCTGTATCTTGACTATGCTAAAAACGTGATTTAACCAGACAGTGTTGTTACTAGTCCCAACTGACTTATCTACAACTTCAGAACCATCTAGAAGGTATGTATGCGAGGTCTGAATAAATTGTATATCGTTTCTCAACCAGTAGTGGTTTGGCATTTTCCCCATTCCATAGGTTTTGCTATTCTTCTTTGAAATGGAAAATATGCATTGATTCAGTCCACAGGCATTTACCACAGGACCTCCGCAACTAGGTTGAAGACCATTGATTCATTTTGtatgctgctgttgttgctgtccTTATTACAATAGATTATGATCCAAATCAAGTGTCAACCTTCCCAAACGTTCCGTCGGGGGGCCTGTaatgtttggggaaggccttgaGCTGCAGACAGTTAAAAGCATACTTGCGACATCCCACGTTCTTCATGGTATTCTCCCGTCTGCAGCCCTCACTgggaaaaaggaggaggagggagggaggggagaggagagggagagaagagggaggggagaggagagggagggaagagggaggggagaggagagggagggaagagggaggggagagggagaggaggggagggaagagggaggggagaagaggggagggaagagggagggagggaagagggaggggagaagggagggaagagggaggggagaagagagggaagagggaggggagaggagagggagggagggaagaggaggcgaggggaggcgaggcgaggcgagggagggaagaggaggcgaggggaggggagggagggaagaggaggcgaggggaggggaggggggcaagcacagagagaggatgacagcaaagtgaagaaaacaaaacaaaaaagggcTCGTGTTAAAAGACAATGAGAAACCCAAAAACCAACCAACACATTGACGCCACTGTCAAAGAAACATGGGGGCAACAGCTAAAGCTAACGGACAGATTGTCCCGGGAAATATCGGGATGTTGTTGGAGGGAGCGGTACAGAACACTAATACTGTGTACAGAAGACCTGCTTTCTAGATAGAGTTACGAGCACCACAGATAAAGTGAAACAAGAGCAATAGCAAAACGCACAGACTTAAATGTTCTACATTCTAATTTCAATGTAACAGTTCCATTCCAGGGAAAACAAACACAACTATTCAAATACTCTGTAGTGAAGTATACACCTTCTCCTCTGGTACATATGGCATGACGTTTATTATAGAACAACATTAAAGCTGATTCTTTGGGCTGCTGACTAATTGACTGCTATTTCACTTTCCAGAGAGAAGCATTAGAGAGAACGGGATAAACGTCTACTAtttcagagagaaagggagaaaaggagaaaagTCTACTATTTCAGAGCGAAAGGAAGAAAAGTCTACTGTTtcagagagaaaggaagaaaagTCTACTAtttcagagagaaagggagaaaagtCTACTGTTTCAGAGCAAAAGGGAGAAAAGTCTACTGTTtcagagagaaaggaagaaaagGCTACTGTTTCAGAGCGAAAGGGAGAAAAGTCTACTGtttcagagagaaagggagaaaagtctgtttcagagagaaagggagaaaagtCTACTGTTTCAGAGCGAAAGGGAGAAaaaagtCTACTGtttcagagagaaagggagaaaagtCTACTGTTTCAGAGCGaaagggagaaaaggagaaaagTCTACTATTTCAGAGCGAAAGGAAGAAAAGGCTACTGTTTCAGAGCGAAAGGGAGAAAAGTCTACTGTttcagagagaaagggaaaaaagTCTACTGtttcagagagaaagggagaaaagtCTACTGTTTCAGAGCGAAAGGGAAAAAAGTCTACTGTTTCAGAGAGAAAGGAAGACAAGTCTACTGTTtcagagagaaaggaagaaaagTCTACTGTTTCAGAgagaaaagtCTACTGTTTCAGAGCGAAAGGAAGAAAAGTCTACTATTTCAGAGCGAAAGGGAGAAAAGTCTACTATTTCAGAGCGAAAGGGAGAAAAGTCTACTATTTCAGAGCATATTCATAAATGGTTATCCAAGCAACCCTGATGTTGGGTTGGGACTTGGCAAAGTACCAGACAAGGGTTAATACAATGATATCTGGAACAGCAACTAGAATTTCTCCCTCTCATTATAGTGACACTTGCATGACGATGATGTAATCACAAACTTTCCATAAGAATACATATATTTAGCAAATCTTGAGTATTTAGACAGACAAGCATGAAAATCTAATGCAACGCAATATAAATATATTCTCTATCGTCAAAAGCACTAAGGAATTCAAGAGAAACAGAAAAATAAAACTTGAGAATTGAGGAACTTGGTTTTAGTTGGAATATTCCAGGATTTAGCATCACTATGGTTACAACATGTTTAACGCAGTGGGTTTCTTCATGGGAATTAAATACACCAGCAGAACAAACTGCCACCAGCACATTCTGCAATTCTCTACAACTTTAGAATGGGCTCCTAATTGCATGTATCCCCAGAATGGAGCAATCCAACTATTTTCTTGGGACCAACTGGGTGACAAGCTTCTGTAGTATCATTACCAACCAGCAGGAGGAGCTATTTCACATTTGGTTGAAACAAACGCCATCCTAATGTTGTACATACTGTGTCctaaatggcgccctattccctatatagtacactactttgaccaggacctatagggctctggtcaaaattagtgcactacatagggaaaagtgtgccatttgggacagaacttGGGTGATGCTCTCATGGAGCACATTTTCCCCTGGCTGTCCCCTCAGCTCTCCTCCCCTGGCTGACAGTCAGATGGTGTTTTCATGGGACAATAGAGGTAGTTCTACACCAGCATACTTATCAATAGATGATCTGATTTTATACATTTCTATTATTTACAATATGGATTTACAAGATTGAAAAAgtaaatactgtagaatactgaGAAAGAAATACTGCATGTACTTACGTATTTGTTGATCATGTAAAACAGTAACATTGCACAAAAATCGCTAAAAATAAAAAACCTCTTGAATATTCAAAACCAAACCATTGAACTAACCTAAATACACCATTAAACCCAGCCTAGCTCTCATACCAGTCACACAGGTGAGAGGCCTATAAGAAGCTTGCATAAAGCTCAACCAACAAGGACAAAATAATCCCTCCAGTTTTCCATTGTGGGGGTCGAGGAGTTGGAAATGAGGGGTGGAGGGGATGTAAGACAAGCGTGACAATCTCACAGGGGAGGCTATTTTGGGACGGATGGTCCATTTCTTTAGTAGGTCACTTTAGATTGGATTGAGTGTGGCCGTCTTGGGACGTAACACTGAAGACAGGTATTATACTGATTCAAATGGAGAGAGGCTATGGGGCTAGAAAACGATAATACCACTAGTCTACATATTAATGAGTGCATATACTATTAGATAGCTAATCATGTTTTATGGGACTAGATAGCAACTACTGTATATGATAATGGTGTGTGGACTCTCTCGGCAGAGACCAGGAAGTCCAGAGTGCAAGGCTTGGAAGTAACCCAAAGAGTCTGATATCAAATCTCCCTTTCTAGGGCACTTCTCTGTGGAAGTGGGATGGATTTGGGCTGCTGGGAGATCTGGAAGTAATACTTTGACCTGGAATACAGATCCAAGACCTGTATCTACCATCTGAGACCTGGCTAAAACATTTGGCACAACAagcatgggctgtgtctcaaatCATCCCctatatttagtgcactactggtCAGAGGTAGTGCATCATTTGGTGGTAGGGAGCCATTTGAGGTTTGCCCATGTAcattctcttcactctctctgtcatttCCATAGAACTGCAACCCTTACCCTCAAACAAAGAACCAATTCATATATACAAACTCTATAGTAAATAGGAAACTTGGTACAGACATGAAATGAAATCTGATAAACTAAAAATTAACACTTTGGAAAAACTACACTGCATAATCAAACAAGCCAACAAAGGTCCCCTGAAATATCATCAATTCCCAGATTTAGCCAATTCAAATTGCTCCGACCAAGATGAAACTGTGTCAATTGGCAAGACAAGCGGATAACCTTCATTAAGATGACAACGTTGAGACAAAAGTGCATTGGTTTAAAGTGAAAGTGGACACAAGTCTCTCCTGCTGTAAGAGTAGGAAGGCCTgaggaacaacaacaaaatggcCACCAGATCAAAACAACATCAGCTTGATATTGCATGGCCAAGCCATCCCTTGGCTTATGCTGTATGCAAACCTTATGGAAGACGTAAACGTCAAGCAAGCCAGAACATTTGCATGACTGAAAATAAGCTCTGTGCAAAACCAAAGGATCCATGGCATCATATCATCATAATAGCATGGTTATAATCATGTCATGAGTTGGGAAGCGGCATTATAAATACTCAAGAACAACTGGGACAAAACTTCCATTAAATTCAGCTAAAACTTCTTACCGGCTATATTTCACAAAGTTTCTCTCCATACTCTGTTTTTGATTGTTGTAAAACAATGGGTGTTAAACTGAGAAATATGTCAGGAcactgacagtaacagtctcctACAGTACTGCACATAGACCTTTAGACCAGCCTCCTGCTCAGACTGGATTGGTTAGGACAGAGAGCAGAGCGGGAGGAGTGCTGGATGCCCATTGGGTGGAACAGCTGGCAGTTTAGTCGAGTGACGCACATAAAGTCCAGACAGATACACACGGTCTGCCCTTGACCAATCAGAGGGTTCTCCCGGCTGAgttccagacagactgacatagAGCGACTGACTGACTCCTTGACTGCCTGTCTTCCTCCTTGACTGACAAACTAACGTTTTGCCTTTCTTCCTGACCGACTGACTGATGGACACACTGGGGGGAACGGGCAGAGAGAAGAGGTGAGTAGAGGTCGAGAGTAGGTGGGGCTGGGTGGCAGAGGGGCTGTGCCTTCAGCTGCAGCGGAGCTTGGCCAGGAAGTAGGCGACGCTGAGGAACAGCCAGACGACCAGCAGGTTGGGGCTGAGGGCCAGCAGGGGCAGGGAGTACAGCAGGCTGGGGTCCAGCCTGAAATCCCGCACAGGCAACAGGCCACTCAGGTTCTTCTGGGTGACCCCCTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU658399 lncRNA upstream 2876 14168370 ~ 14169647 (+) True G577259
TU658314 lncRNA upstream 56906 14115016 ~ 14115617 (+) False G577180
TU658375 lncRNA upstream 65858 14106428 ~ 14106665 (+) True G577235
TU658376 lncRNA upstream 68099 14104111 ~ 14104424 (+) True G577236
TU658374 lncRNA upstream 71132 14101165 ~ 14101391 (+) True G577234
TU658582 lncRNA downstream 59092 14239156 ~ 14239433 (+) True G577408
TU658583 lncRNA downstream 63848 14243912 ~ 14244141 (+) True G577409
TU658585 lncRNA downstream 65118 14245182 ~ 14247502 (+) True G577411
TU658596 lncRNA downstream 90296 14270360 ~ 14286064 (+) True G577421
TU658675 lncRNA downstream 153563 14333627 ~ 14333857 (+) True G577496
XM_021608585.2 mRNA upstream 6001 14161899 ~ 14166522 (+) False LOC110527360
XM_036982671.1 mRNA upstream 6001 14162113 ~ 14166522 (+) True LOC110527360
XM_021608580.2 mRNA upstream 12938 14146211 ~ 14159585 (+) False LOC110527359
XM_021608582.2 mRNA upstream 12938 14146211 ~ 14159585 (+) False LOC110527359
XM_021608583.2 mRNA upstream 12938 14146212 ~ 14159585 (+) False LOC110527359
XM_036984407.1 mRNA downstream 38289 14218353 ~ 14230983 (+) False LOC118965342
XM_036982681.1 mRNA downstream 71222 14251286 ~ 14259513 (+) True LOC110527363
XM_036982707.1 mRNA downstream 649912 14829976 ~ 14833322 (+) False LOC110527366
XM_036982708.1 mRNA downstream 649916 14829980 ~ 14833322 (+) True LOC110527366
XM_036982709.1 mRNA downstream 697659 14877723 ~ 14902881 (+) True LOC110527365
TU658320 other upstream 19899 14146070 ~ 14152624 (+) True LOC110527359
TU658313 other upstream 56178 14115336 ~ 14116345 (+) True G577180
TU657184 other upstream 682786 13486516 ~ 13489737 (+) True G576241
TU657068 other upstream 965034 13173312 ~ 13207489 (+) True G576161
TU657066 other upstream 999449 13172784 ~ 13173074 (+) True G576160
TU658450 other downstream 50653 14230717 ~ 14230932 (+) True LOC118965342
TU658765 other downstream 226032 14406096 ~ 14406598 (+) True G577561
TU659120 other downstream 781141 14961205 ~ 14971607 (+) True G577876
TU659170 other downstream 792561 14972625 ~ 14974604 (+) False G577909
TU659171 other downstream 792561 14972625 ~ 14974604 (+) False G577909

Expression Profile