RNA id: TU658678


Basic Information

Item Value
RNA id TU658678
length 207
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G577499
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14335983 ~ 14336189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttcaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU658675 lncRNA upstream 2126 14333627 ~ 14333857 (+) True G577496
TU658596 lncRNA upstream 49919 14270360 ~ 14286064 (+) True G577421
TU658585 lncRNA upstream 88481 14245182 ~ 14247502 (+) True G577411
TU658583 lncRNA upstream 91842 14243912 ~ 14244141 (+) True G577409
TU658582 lncRNA upstream 96550 14239156 ~ 14239433 (+) True G577408
TU658723 lncRNA downstream 47639 14383828 ~ 14384029 (+) True G577535
TU658750 lncRNA downstream 56411 14392600 ~ 14392859 (+) True G577546
TU658751 lncRNA downstream 57569 14393758 ~ 14393977 (+) True G577547
TU658758 lncRNA downstream 61629 14397818 ~ 14398046 (+) True G577554
TU658819 lncRNA downstream 120545 14456734 ~ 14457565 (+) True G577613
XM_036982681.1 mRNA upstream 76470 14251286 ~ 14259513 (+) True LOC110527363
XM_036984407.1 mRNA upstream 105000 14218353 ~ 14230983 (+) False LOC118965342
XM_021608585.2 mRNA upstream 169461 14161899 ~ 14166522 (+) False LOC110527360
XM_036982671.1 mRNA upstream 169461 14162113 ~ 14166522 (+) True LOC110527360
XM_036982669.1 mRNA upstream 176398 14146212 ~ 14159585 (+) False LOC110527359
XM_036982707.1 mRNA downstream 493787 14829976 ~ 14833322 (+) False LOC110527366
XM_036982708.1 mRNA downstream 493791 14829980 ~ 14833322 (+) True LOC110527366
XM_036982709.1 mRNA downstream 541534 14877723 ~ 14902881 (+) True LOC110527365
XM_036982699.1 mRNA downstream 567464 14903653 ~ 14912668 (+) False LOC110527369
XM_036982698.1 mRNA downstream 567465 14903654 ~ 14912668 (+) False LOC110527369
TU658450 other upstream 105051 14230717 ~ 14230932 (+) True LOC118965342
TU658406 other upstream 155919 14172523 ~ 14180064 (+) True G577261
TU658320 other upstream 183359 14146070 ~ 14152624 (+) True LOC110527359
TU658313 other upstream 219638 14115336 ~ 14116345 (+) True G577180
TU657184 other upstream 846246 13486516 ~ 13489737 (+) True G576241
TU658765 other downstream 69907 14406096 ~ 14406598 (+) True G577561
TU659120 other downstream 625016 14961205 ~ 14971607 (+) True G577876
TU659170 other downstream 636436 14972625 ~ 14974604 (+) False G577909
TU659171 other downstream 636436 14972625 ~ 14974604 (+) False G577909
TU659176 other downstream 636436 14972625 ~ 15014535 (+) True G577909

Expression Profile