RNA id: TU658723


Basic Information

Item Value
RNA id TU658723
length 202
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G577535
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14383828 ~ 14384029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtagactttccactgtagagtttatgtcatcttatcattgaggagaatgtctcagatgacaaccgaactgacatcacaTTCATTAAGTACGACCACATacgttcaattggtcggattaccagaatatagttaatttgccctcaccttctgatgttcacagaatctctatgttaaccaagggttttgcaaatttcacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU658678 lncRNA upstream 47639 14335983 ~ 14336189 (+) True G577499
TU658675 lncRNA upstream 49971 14333627 ~ 14333857 (+) True G577496
TU658596 lncRNA upstream 97764 14270360 ~ 14286064 (+) True G577421
TU658585 lncRNA upstream 136326 14245182 ~ 14247502 (+) True G577411
TU658583 lncRNA upstream 139687 14243912 ~ 14244141 (+) True G577409
TU658750 lncRNA downstream 8571 14392600 ~ 14392859 (+) True G577546
TU658751 lncRNA downstream 9729 14393758 ~ 14393977 (+) True G577547
TU658758 lncRNA downstream 13789 14397818 ~ 14398046 (+) True G577554
TU658819 lncRNA downstream 72705 14456734 ~ 14457565 (+) True G577613
TU658824 lncRNA downstream 87802 14471831 ~ 14472090 (+) True G577618
XM_036982681.1 mRNA upstream 124315 14251286 ~ 14259513 (+) True LOC110527363
XM_036984407.1 mRNA upstream 152845 14218353 ~ 14230983 (+) False LOC118965342
XM_021608585.2 mRNA upstream 217306 14161899 ~ 14166522 (+) False LOC110527360
XM_036982671.1 mRNA upstream 217306 14162113 ~ 14166522 (+) True LOC110527360
XM_036982669.1 mRNA upstream 224243 14146212 ~ 14159585 (+) False LOC110527359
XM_036982707.1 mRNA downstream 445947 14829976 ~ 14833322 (+) False LOC110527366
XM_036982708.1 mRNA downstream 445951 14829980 ~ 14833322 (+) True LOC110527366
XM_036982709.1 mRNA downstream 493694 14877723 ~ 14902881 (+) True LOC110527365
XM_036982699.1 mRNA downstream 519624 14903653 ~ 14912668 (+) False LOC110527369
XM_036982698.1 mRNA downstream 519625 14903654 ~ 14912668 (+) False LOC110527369
TU658450 other upstream 152896 14230717 ~ 14230932 (+) True LOC118965342
TU658406 other upstream 203764 14172523 ~ 14180064 (+) True G577261
TU658320 other upstream 231204 14146070 ~ 14152624 (+) True LOC110527359
TU658313 other upstream 267483 14115336 ~ 14116345 (+) True G577180
TU657184 other upstream 894091 13486516 ~ 13489737 (+) True G576241
TU658765 other downstream 22067 14406096 ~ 14406598 (+) True G577561
TU659120 other downstream 577176 14961205 ~ 14971607 (+) True G577876
TU659170 other downstream 588596 14972625 ~ 14974604 (+) False G577909
TU659171 other downstream 588596 14972625 ~ 14974604 (+) False G577909
TU659176 other downstream 588596 14972625 ~ 15014535 (+) True G577909

Expression Profile