RNA id: TU659176


Basic Information

Item Value
RNA id TU659176
length 2131
RNA type TUCP
GC content 0.38
exon number 2
gene id G577909
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14972625 ~ 15014535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCTGGGAATGGAAGGTTTATTCTGCTGACGACAGGTTTCACCTTCCCTTCGATCCCAATAGAACCCATTATTACATTCATGTTAAGCAATATGCCGAAAGGATGGATATAGTTATCAATGATACTGATCAGACCTGATGAGGAGTATTACGATCAATAACAACATTAATCAGAGTTAGAGTTAATGCTACATCAGAAGATTCAACATCACTGACTCAACAAAATTCATAAGCATCAGCATTTAAACAATGGCTGGGCTTGACTCAAACAGTGAAAAAGCCATCttttaattaaaaataataataaaatagtgAAATGTGTTTATGAGTTGCACAGTGTCATAGTGAGTCTAATGAGGAGATTAGTGGAGATCAATAGATTACTAGATGTAAGTAGAGTATAAATGACTTGAGATGATGAGATAGAGATGACGACATGGGATGGACAGTTTAAAACAGAGATAATAATGTTATCTGAGATgcaccagatgacatggtgtggCTGATTGATTGAATTGGTGTTCCTATTGATTTGTGATGATGGTACAAGCTTGCATGCGGAGTGTGGCTGGCTATGATTTGGCAGAAACCAAACCAATGAATACATTGTATAAAACTTGATATCAACATATTTGAATACTGTTCACACTGTGAAACTATATTACAGAGACAATATAATATGAAACTGACTCATAAATACTCGATACACAGGGAAATATACAAAATGTATGTCTTCTTCATATTCTGGACTAAAAAAACAATGGTAGACATTTTCCAGATGGCTCCGATAGCAGACACATTACAATACAAAGACCTGCTACATTTTCTTTTCAACAATAACGTGACGGCACATCCAGTTCAATAATAAAGAGAATATTAATAGAATAGCATACAGAAGTACACACAGAATACACTATAAATGTCAAGacagaaaaatataaaaatagcATTCACAATAAAAGAATAATCCATATCAGAAGAAGTACATCGTAGTAAATAGTAGTACAATAGCAGTACACAGTGAGGGAGGTTTTGTTTGATCAGTCTGGAGGTACTAGCTGTATCTGAAACAGCAGCCCTTTTCCTATACTAGTGCACTGTGGGAGTGTTTTGGCCCAAagtactatagggaatagggttccatttcagatTTCCCAATTGTTATTGTAGTACTAGAGTAATACATAGTCTAGTGTATATTGTCCTGGCTGTAGGTTGTTATTGTAGTACTAGAGTAGTACATAGTCTAGTGTATATGGTCCTGGCTGTAGGTTGTTATTGTAGTACTAGAGTAATACATAGTCTAGTGTATATTGTCCTGGCTGTAGGTTGTTATTGTAGTACTAGAGTAGTACATAGTCTAGTGTATATTGTCCTGGCTGTAGGTTGTTATTGTAGTACTAGAGTAGTACATAGTCTAGTGTATATGGTCCTGGCTGTAGGTTGTTATTGTAGTACTAGAGTAATACATAGTCTAGTGTATATTGTCCTGGCTGAATGTTGTTATTGTAGTACTAGAGTAGTACATAGTCTAGTGTATATTGTCCTGGCTGTAGGTTGTTATTGTAGTACTAGAGTAATACATAGTCTAGTGTATATTGTCCTGGCTGTAGGTTGTTGTTGTAGTActactacagtaatacagtagtatTGATTCTCCAGTGTCTGTTGGCTGTATATGGTTGGTGTTGGCTGTAGTTTTTGCTGCTTGGCAGGAGGAGTCGGACTGTTTGGTTTTGTAGTCCTGTGAAGTGTGTGAtcagacacacatacacgtacGCACTCAAGTCTCTCTTgctctgacacactcacacacacacacacaagcatctttctttgacacacacacacacagacacacacacatgcacacacacacacatgcacacccacacacatactcacacaaacacacacacgcaaacacacacacaagttaaaTCATCTGTCTGTCACAGTGAatagctagcctggtcccagatctgttagttCTCTTGCCAAATTCCTTGTTGCCATTGTCAAGTCAAACATGTTTGGCATGACACTGAATAACAATGagttggcatgatggcacaaacagactggcattCAGACTAGCCATTGCAGTGAAAACCTTtctaacattgtgtg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659132 lncRNA upstream 82797 14888390 ~ 14889828 (+) True G577888
TU659112 lncRNA upstream 90318 14876748 ~ 14882307 (+) True G577873
TU659108 lncRNA upstream 103179 14869215 ~ 14869446 (+) True G577870
TU659106 lncRNA upstream 104904 14867499 ~ 14867721 (+) True G577868
TU659066 lncRNA upstream 169316 14803090 ~ 14803309 (+) True G577836
TU659208 lncRNA downstream 5022 15019557 ~ 15020204 (+) True G577927
TU659213 lncRNA downstream 10125 15024660 ~ 15024868 (+) True G577932
TU659244 lncRNA downstream 66313 15080848 ~ 15081268 (+) True G577960
TU659252 lncRNA downstream 78587 15093122 ~ 15093386 (+) True G577967
TU659255 lncRNA downstream 79691 15094226 ~ 15100578 (+) True G577968
XM_021608610.2 mRNA upstream 40875 14929201 ~ 14931750 (+) True LOC110527376
XM_021608228.2 mRNA upstream 45585 14921809 ~ 14927040 (+) False LOC100136320
NM_001124568.1 mRNA upstream 46206 14924122 ~ 14926419 (+) True LOC100136320
XM_021608608.2 mRNA upstream 51584 14914708 ~ 14921041 (+) True wbp4
XM_021608597.2 mRNA upstream 59957 14903656 ~ 14912668 (+) True LOC110527369
XM_036982714.1 mRNA downstream 72923 15087458 ~ 15091885 (+) True LOC110527389
trnar-ccu mRNA downstream 314109 15328644 ~ 15328716 (+) True trnar-ccu
trnar-ccu-2 mRNA downstream 316559 15331094 ~ 15331164 (+) True trnar-ccu-2
trnar-ccu-3 mRNA downstream 319260 15333795 ~ 15333865 (+) True trnar-ccu-3
trnar-ccu-4 mRNA downstream 320626 15335161 ~ 15335233 (+) True trnar-ccu-4
TU659120 other upstream 1018 14961205 ~ 14971607 (+) True G577876
TU658765 other upstream 566027 14406096 ~ 14406598 (+) True G577561
TU658450 other upstream 741693 14230717 ~ 14230932 (+) True LOC118965342
TU658406 other upstream 792561 14172523 ~ 14180064 (+) True G577261
TU658320 other upstream 820001 14146070 ~ 14152624 (+) True LOC110527359
TU659333 other downstream 240636 15255171 ~ 15256207 (+) True G578031
TU659798 other downstream 447710 15462245 ~ 15464365 (+) True G578389
TU659773 other downstream 478366 15492901 ~ 15498586 (+) True LOC110528902
TU660251 other downstream 979123 15993658 ~ 16004993 (+) True LOC110528906
TU660317 other downstream 1031748 16046283 ~ 16048007 (+) True LOC110528915

Expression Profile