RNA id: TU659319


Basic Information

Item Value
RNA id TU659319
length 1770
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G578027
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15238123 ~ 15239924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacaaaacatagaaaccaAAACATTAGTGATGAGTTTGTCATTCAGAAACAAAGAGGTCTAGAGTTTTTATTTTAAAGAGTCCAAAAGTAGTGATCAGCAGCCTGTTCACCAGATAGAggtgtatcacacacacacacacacacacacacacacacaactctttaTTGCTAACATTCTAAAAAGCAACCTGTCTCCATAACAGTAACTTAAGCAGTAACTTAAGCATGACATTTAAAGGAGCAGTCTGGAAGTTTAATTTCCCGGACAAAAGGGTTTCCCCTGCACTTGTTTGTAATTTGAGGGAGTGGGTCTCGGTGAATGTAATATTTCTTTGATGAATGTGTTTGCAGTCACTAAATATACATACATGACCCACACACGCATACCTCACAGAACTGTTGCATTCTGGGTAATGGAGTTCTACAGCATGGCTTAAAAGCATTAAAGAAAACAGCTTCAGATGTTCTCGTCTTTGTTTTCAgaaatgcaaatgtatttaataaaatgtcaaacattatttaatttttttataaattaagTTTTGTTTAAGATAAAATGATAATGTTCAATCTAAGGACATAAGATGCTATGAAATAGTTAATATAAAATGGTAAACCAACAGAAAGAGTGAACAAAACAACAGTAGATAAATCAGATGGCTTCATCATGCTTGGCACCGTACAAACAGGAAGGAGTCACAATCAGACCAGACCAATCAGGTGGGAGACAGCTTTACACAATAATTctttacacacagagacagataagacagacagacagacacagagtggTTCATTCTCAGACAATTCTCAAATGATTCTCAGTTGAATCAGGTTTTACTCTGGCATTTCAGCATAACATAAAACACACAAACTGAACGGCAGAAACTAGCAGTGTGCTGTGCAAGTTATCAAGTTCTTCACATTACAATTCAAAAGTCATTTTAAAGTACCTAAAGAAACAAGAAACAAAACTTGAACAATGTGTTATTTAAAAGACAGAATGAAAGCATATTTCTAGTAAACAGCAGAATGTTGTTATTCTTGTTTTGTTTTAACAgttaatctgatgcagcaccttGAGAATTGAAAGACTTCAGAGTGGAtagagggacaggaggagaagagggagacagagggacaggaggagaagaggagggagacagaggcgGGGATTTTGTTTTAAAGGGACATAGCCAATATTTTAGAGAAgaggggtggagtggtggagagaaagaaagattagGATCCGGAAGTTCCGGTTCGTCTCCACAGACGGTAGTCGAGATCTTGGAAAACCGGGAAACCAGCGCCCCCTTTATCTAAACACTCCTCTACCTTCAGACTCCTCTTCATAATAGTCATGTAtctctttattatttcattcttTATAGTCCTTTAAGTCTGTTACAGTGTTGTAGTCTCTCAGTGTTTCACTGTCTTCAAGTTTGATTCTCTCAGAGCCTGATTCATTTACACTTCAATTCTTTCACactgatttgatatttgattcCCTCAGCGTTCGATTCATTCAGCGTTTGATTCTCTCAGTTAGATTCAGTGTTGGACTTTCAGGGTTCAGGGTGCGATTTGATTCTCTTGGTCCATTGTTTTAATTGGCGTCTGAAATTAGAGTTGGCCCGTGATCGACAGCTGAGCATTCCAATAGGAAGATGGTGGGAGGAGTTAGTTTCACCAGTTCATCATGGAGCTACGGTTGAGGGTCATGAAGAAGACCTGACTGCTGCCTCCAGACCTCACCGATGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659303 lncRNA upstream 10055 15198255 ~ 15228068 (+) False G578016
TU659307 lncRNA upstream 22714 15210566 ~ 15215409 (+) True G578018
TU659305 lncRNA upstream 30763 15198255 ~ 15207360 (+) True G578016
TU659300 lncRNA upstream 40103 15195668 ~ 15198020 (+) True G578013
TU659299 lncRNA upstream 43687 15194126 ~ 15194436 (+) True G578012
TU659327 lncRNA downstream 4167 15244091 ~ 15244636 (+) True G578029
TU659362 lncRNA downstream 52644 15292568 ~ 15292954 (+) True G578057
TU659661 lncRNA downstream 90845 15330769 ~ 15335156 (+) True G578287
TU659664 lncRNA downstream 96058 15335982 ~ 15346591 (+) True G578290
TU659671 lncRNA downstream 113162 15353086 ~ 15354815 (+) True G578297
XM_036982714.1 mRNA upstream 146238 15087458 ~ 15091885 (+) True LOC110527389
XM_036982695.1 mRNA upstream 235565 14991829 ~ 15002558 (+) False LOC110519434
XM_036982696.1 mRNA upstream 235565 14991829 ~ 15002558 (+) True LOC110519434
XM_021608610.2 mRNA upstream 306373 14929201 ~ 14931750 (+) True LOC110527376
NM_001124568.1 mRNA upstream 311704 14924122 ~ 14926419 (+) True LOC100136320
trnar-ccu mRNA downstream 88720 15328644 ~ 15328716 (+) True trnar-ccu
trnar-ccu-2 mRNA downstream 91170 15331094 ~ 15331164 (+) True trnar-ccu-2
trnar-ccu-3 mRNA downstream 93871 15333795 ~ 15333865 (+) True trnar-ccu-3
trnar-ccu-4 mRNA downstream 95237 15335161 ~ 15335233 (+) True trnar-ccu-4
trnar-ccu-5 mRNA downstream 107719 15347643 ~ 15347715 (+) True trnar-ccu-5
TU659176 other upstream 223588 14972625 ~ 15014535 (+) True G577909
TU659170 other upstream 263519 14972625 ~ 14974604 (+) False G577909
TU659171 other upstream 263519 14972625 ~ 14974604 (+) False G577909
TU659120 other upstream 266516 14961205 ~ 14971607 (+) True G577876
TU658765 other upstream 831525 14406096 ~ 14406598 (+) True G577561
TU659333 other downstream 15247 15255171 ~ 15256207 (+) True G578031
TU659798 other downstream 222321 15462245 ~ 15464365 (+) True G578389
TU659773 other downstream 252977 15492901 ~ 15498586 (+) True LOC110528902
TU660251 other downstream 753734 15993658 ~ 16004993 (+) True LOC110528906
TU660317 other downstream 806359 16046283 ~ 16048007 (+) True LOC110528915

Expression Profile