RNA id: TU659362


Basic Information

Item Value
RNA id TU659362
length 387
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G578057
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15292568 ~ 15292954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCGATCTCATCCAGACTCCGGGCAGGGGAATCAGTCGCCATGATTCAAATTAAATATTATACAAATCACCAGAATCAGAAACCATCCAGACAACGAGACCACGGAGTAAATGCCCTTGGCCCCCGCTATAGGCTGCCCTCTTCCACGGGGAAACAAGCCTGCCTACCTCTTTCTCACCGATAAGCGATCGAGAGATTGCGACtgagaccgaaagagagagaaaataaaaaaagagagcaTATAATATATCCCCGTTTGTCAGTAGGTTTAGAGGTGACCGACGTTAAAAAAGCCTGCTAGAGCAGAGATGCTGGTGTGTGACTATAATGGGACATGAACATGATCAGCAGCAGCACCGAATCCATGTCTCTTCAACCGACAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659327 lncRNA upstream 47932 15244091 ~ 15244636 (+) True G578029
TU659319 lncRNA upstream 52644 15238123 ~ 15239924 (+) True G578027
TU659303 lncRNA upstream 64500 15198255 ~ 15228068 (+) False G578016
TU659307 lncRNA upstream 77159 15210566 ~ 15215409 (+) True G578018
TU659305 lncRNA upstream 85208 15198255 ~ 15207360 (+) True G578016
TU659661 lncRNA downstream 37815 15330769 ~ 15335156 (+) True G578287
TU659664 lncRNA downstream 43028 15335982 ~ 15346591 (+) True G578290
TU659671 lncRNA downstream 60132 15353086 ~ 15354815 (+) True G578297
TU659682 lncRNA downstream 82749 15375703 ~ 15380028 (+) True G578303
TU659731 lncRNA downstream 124843 15417797 ~ 15418683 (+) True G578344
XM_036982714.1 mRNA upstream 200683 15087458 ~ 15091885 (+) True LOC110527389
XM_036982695.1 mRNA upstream 290010 14991829 ~ 15002558 (+) False LOC110519434
XM_036982696.1 mRNA upstream 290010 14991829 ~ 15002558 (+) True LOC110519434
XM_021608610.2 mRNA upstream 360818 14929201 ~ 14931750 (+) True LOC110527376
NM_001124568.1 mRNA upstream 366149 14924122 ~ 14926419 (+) True LOC100136320
trnar-ccu mRNA downstream 35690 15328644 ~ 15328716 (+) True trnar-ccu
trnar-ccu-2 mRNA downstream 38140 15331094 ~ 15331164 (+) True trnar-ccu-2
trnar-ccu-3 mRNA downstream 40841 15333795 ~ 15333865 (+) True trnar-ccu-3
trnar-ccu-4 mRNA downstream 42207 15335161 ~ 15335233 (+) True trnar-ccu-4
trnar-ccu-5 mRNA downstream 54689 15347643 ~ 15347715 (+) True trnar-ccu-5
TU659333 other upstream 36361 15255171 ~ 15256207 (+) True G578031
TU659176 other upstream 278033 14972625 ~ 15014535 (+) True G577909
TU659170 other upstream 317964 14972625 ~ 14974604 (+) False G577909
TU659171 other upstream 317964 14972625 ~ 14974604 (+) False G577909
TU659120 other upstream 320961 14961205 ~ 14971607 (+) True G577876
TU659798 other downstream 169291 15462245 ~ 15464365 (+) True G578389
TU659773 other downstream 199947 15492901 ~ 15498586 (+) True LOC110528902
TU660251 other downstream 700704 15993658 ~ 16004993 (+) True LOC110528906
TU660317 other downstream 753329 16046283 ~ 16048007 (+) True LOC110528915
TU660552 other downstream 1165091 16458045 ~ 16460893 (+) False LOC110528786

Expression Profile