RNA id: TU659890


Basic Information

Item Value
RNA id TU659890
length 399
lncRNA type intronic
GC content 0.61
exon number 2
gene id G578470
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15765064 ~ 15765544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctcgctccctcttctctctcgtccctcctctctctctcctcccgctccctcttctctctcgtccctcctctctctccctctcgctccctcttctctctcccccctcttctctctccctctcgctccctcttctctctcgtccctcctctctctctcctcccgctccctcttctctctcgtccctcctctctctccctctcgctccctcttctctctcgtccctcctctctctctcctcccgctccctcttctctctcgtcccccctcttctctctccctctcgctccctcttctctctcgtccctcttctctctccctctcgctccctcttctctctcgtccctcttctctctccctctcgctccctcttctctctcgtccctcctctctctctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU659884 lncRNA upstream 23249 15741558 ~ 15741815 (+) True G578464
TU659881 lncRNA upstream 23598 15738394 ~ 15741466 (+) True G578462
TU659882 lncRNA upstream 23897 15739178 ~ 15741167 (+) False G578463
TU659883 lncRNA upstream 24848 15739178 ~ 15740216 (+) True G578463
TU659780 lncRNA upstream 142223 15606117 ~ 15622841 (+) True ppp2r3a
TU659900 lncRNA downstream 23770 15789314 ~ 15791417 (+) True G578479
TU659755 lncRNA downstream 51042 15816586 ~ 15819486 (+) True G578351
TU659917 lncRNA downstream 81496 15847040 ~ 15860489 (+) True G578496
TU660235 lncRNA downstream 129892 15895436 ~ 15895784 (+) True G578755
TU660264 lncRNA downstream 137950 15903494 ~ 15911223 (+) False LOC110528900
XM_036982731.1 mRNA upstream 118008 15605957 ~ 15647056 (+) False ppp2r3a
XM_036982739.1 mRNA downstream 66266 15831810 ~ 15868293 (+) False LOC110495697
XM_036982741.1 mRNA downstream 66369 15831913 ~ 15868293 (+) False LOC110495697
XR_005052529.1 mRNA downstream 75039 15840583 ~ 15867123 (+) False LOC110495697
XM_036982737.1 mRNA downstream 75043 15840587 ~ 15868293 (+) False LOC110495697
XM_036982738.1 mRNA downstream 75053 15840597 ~ 15868293 (+) True LOC110495697
TU659773 other upstream 266478 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 300699 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 508857 15255171 ~ 15256207 (+) True G578031
TU659176 other upstream 750529 14972625 ~ 15014535 (+) True G577909
TU659171 other upstream 790460 14972625 ~ 14974604 (+) False G577909
TU660251 other downstream 228114 15993658 ~ 16004993 (+) True LOC110528906
TU660317 other downstream 280739 16046283 ~ 16048007 (+) True LOC110528915
TU660552 other downstream 692501 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 692501 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 696883 16462427 ~ 16463692 (+) True LOC110528786

Expression Profile