RNA id: TU660341


Basic Information

Item Value
RNA id TU660341
length 289
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G578831
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16070007 ~ 16070295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGAACCTCCCCTTGAgcatccccttctcctcctcccgttCTGTCACCTCCTCCAGCCATGGAAGCAAAGTCCACCTCCGACTCATTTTTCTTACAGCAGTAGTACTGGAattggagaaggaggggaggttTTGTTGCCAATCAGTTATTGTTCATGAAAGACTGTGcagataaaacacacacacaggcacacgcacacacaaacatacacacagtcacatggacacacacacacaggttacctGGAGCCTGCAGTAGCACAGCACTGCTACAATGCAGAGCAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660295 lncRNA upstream 39102 15973994 ~ 16030905 (+) True G578793
TU660253 lncRNA upstream 44935 16017180 ~ 16025072 (+) False LOC118936678
TU660254 lncRNA upstream 44935 16017180 ~ 16025072 (+) False LOC118936678
TU660255 lncRNA upstream 44935 16017487 ~ 16025072 (+) True LOC118936678
TU660311 lncRNA upstream 56155 16013363 ~ 16013852 (+) True G578808
TU660367 lncRNA downstream 40411 16110706 ~ 16110972 (+) True G578848
TU660379 lncRNA downstream 56752 16127047 ~ 16127308 (+) True G578859
TU660380 lncRNA downstream 60646 16130941 ~ 16131267 (+) True G578860
TU660386 lncRNA downstream 63746 16134041 ~ 16134385 (+) True G578865
TU660388 lncRNA downstream 64734 16135029 ~ 16135324 (+) True G578867
XM_021611100.2 mRNA upstream 21959 16046065 ~ 16048048 (+) False LOC110528915
XM_036982751.1 mRNA upstream 35505 16026218 ~ 16034502 (+) True LOC110528881
XM_036982761.1 mRNA upstream 46281 16019712 ~ 16023726 (+) False LOC118936678
XM_036982759.1 mRNA upstream 65342 15993464 ~ 16004665 (+) False LOC110528906
XM_036982758.1 mRNA upstream 65342 15993467 ~ 16004665 (+) False LOC110528906
XM_036982749.1 mRNA downstream 8544 16078839 ~ 16097818 (+) False LOC110528868
XM_036982750.1 mRNA downstream 8544 16078839 ~ 16097818 (+) False LOC110528868
XM_036982745.1 mRNA downstream 8545 16078840 ~ 16097818 (+) False LOC110528868
XM_036982746.1 mRNA downstream 8545 16078840 ~ 16097818 (+) False LOC110528868
XM_036982747.1 mRNA downstream 8545 16078840 ~ 16097818 (+) False LOC110528868
TU660317 other upstream 22000 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 65014 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 571421 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 605642 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 813800 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 387750 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 387750 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 392132 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 748247 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 972114 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile