RNA id: TU660367


Basic Information

Item Value
RNA id TU660367
length 222
lncRNA type intronic
GC content 0.43
exon number 2
gene id G578848
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16110706 ~ 16110972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagttccccgggcgccgaagaagtggatgtcgattaaggtagCCCCCCTCACCTctatgattcagaggggttgggttaaatgcggaaaacacattccagttgactacattcagttggacaaatTGGAGTAGCTGTATTATCTGGAGTAGCTGTATTATCTGTAATAGCTGTATTATCTGTAATAGCTGTATTACCTGTAATAGCTGTATTATCTAGAGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660341 lncRNA upstream 40411 16070007 ~ 16070295 (+) True G578831
TU660295 lncRNA upstream 79801 15973994 ~ 16030905 (+) True G578793
TU660253 lncRNA upstream 85634 16017180 ~ 16025072 (+) False LOC118936678
TU660254 lncRNA upstream 85634 16017180 ~ 16025072 (+) False LOC118936678
TU660255 lncRNA upstream 85634 16017487 ~ 16025072 (+) True LOC118936678
TU660379 lncRNA downstream 16075 16127047 ~ 16127308 (+) True G578859
TU660380 lncRNA downstream 19969 16130941 ~ 16131267 (+) True G578860
TU660386 lncRNA downstream 23069 16134041 ~ 16134385 (+) True G578865
TU660388 lncRNA downstream 24057 16135029 ~ 16135324 (+) True G578867
TU660389 lncRNA downstream 24408 16135380 ~ 16135680 (+) True G578868
XM_036982749.1 mRNA upstream 12888 16078839 ~ 16097818 (+) False LOC110528868
XM_036982750.1 mRNA upstream 12888 16078839 ~ 16097818 (+) False LOC110528868
XM_036982745.1 mRNA upstream 12888 16078840 ~ 16097818 (+) False LOC110528868
XM_036982746.1 mRNA upstream 12888 16078840 ~ 16097818 (+) False LOC110528868
XM_036982747.1 mRNA upstream 12888 16078840 ~ 16097818 (+) False LOC110528868
XM_021611023.2 mRNA downstream 13303 16124275 ~ 16142191 (+) True LOC110528863
XM_036982755.1 mRNA downstream 50721 16161693 ~ 16176408 (+) False LOC110528882
XM_021611053.2 mRNA downstream 50721 16161693 ~ 16176472 (+) False LOC110528882
XM_036982754.1 mRNA downstream 50721 16161693 ~ 16177026 (+) False LOC110528882
XM_036982753.1 mRNA downstream 50741 16161713 ~ 16177021 (+) False LOC110528882
TU660317 other upstream 62699 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 105713 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 612120 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 646341 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 854499 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 347073 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 347073 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 351455 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 707570 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 931437 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile