RNA id: TU660411


Basic Information

Item Value
RNA id TU660411
length 308
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G578890
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16198946 ~ 16199253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTtactcaagtttgccaaaaaagcacctggaagcacctggatgatcatcaagacgcttggaagaatgttctatggacagatgattcaaaagtataactttttggatgacatgggtcccattattcctggcgaaaaccaaacactgcgtAGCTCTTTATGAACTTTTGAAgcaatccaaacatgacaatTTAATTCACACAGTAACATTAATTTCGTCGATTTCACGTTTTCATCTGTCTTCACACCTCACAGGGGTCTGTGAGAACGTCCCTCCCTGTAGAAGGACACCGACAAGGTGTGTTTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660384 lncRNA upstream 17114 16154281 ~ 16181832 (+) True G578863
TU660398 lncRNA upstream 46714 16152019 ~ 16152232 (+) True G578877
TU660397 lncRNA upstream 47291 16151436 ~ 16151655 (+) True G578876
TU660394 lncRNA upstream 50883 16147747 ~ 16148063 (+) True G578873
TU660391 lncRNA upstream 61937 16136775 ~ 16137009 (+) True G578870
TU660414 lncRNA downstream 2259 16201512 ~ 16201797 (+) True G578893
TU660329 lncRNA downstream 12356 16211609 ~ 16212000 (+) True G578821
TU660424 lncRNA downstream 27620 16226873 ~ 16227091 (+) True G578903
TU660425 lncRNA downstream 28796 16228049 ~ 16228313 (+) True G578904
TU660426 lncRNA downstream 29371 16228624 ~ 16228837 (+) True G578905
XM_036982754.1 mRNA upstream 21920 16161693 ~ 16177026 (+) False LOC110528882
XM_036982753.1 mRNA upstream 21925 16161713 ~ 16177021 (+) False LOC110528882
XM_036982752.1 mRNA upstream 21926 16161715 ~ 16177020 (+) True LOC110528882
XM_021611053.2 mRNA upstream 22474 16161693 ~ 16176472 (+) False LOC110528882
XM_036982755.1 mRNA upstream 22538 16161693 ~ 16176408 (+) False LOC110528882
XM_036982763.1 mRNA downstream 2936 16202189 ~ 16210164 (+) False LOC110528873
XR_005052533.1 mRNA downstream 2936 16202189 ~ 16210165 (+) False LOC110528873
XM_021611044.2 mRNA downstream 2937 16202190 ~ 16210163 (+) False LOC110528873
XM_036982764.1 mRNA downstream 2937 16202190 ~ 16210164 (+) True LOC110528873
XM_036982766.1 mRNA downstream 30551 16229804 ~ 16268664 (+) False LOC110528895
TU660317 other upstream 150939 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 193953 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 700360 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 734581 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 942739 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 258792 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 258792 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 263174 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 619289 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 843156 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile