RNA id: TU660424


Basic Information

Item Value
RNA id TU660424
length 219
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G578903
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16226873 ~ 16227091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GagtgtgtccctgtactaaaatgGATCTTTCTTattcgtttttgaagttacaagcctgaaaacttgaacatagactgctgacatcctatggaagccataggaattgcatcatGGGAGCTAGGATTTAGTATGCCCctatactttccattgtaagagcatgggctctccaaaaaaaatctgttttttttggggggggattttctcctaccatatctattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660329 lncRNA upstream 14873 16211609 ~ 16212000 (+) True G578821
TU660414 lncRNA upstream 25076 16201512 ~ 16201797 (+) True G578893
TU660411 lncRNA upstream 27620 16198946 ~ 16199253 (+) True G578890
TU660384 lncRNA upstream 45041 16154281 ~ 16181832 (+) True G578863
TU660398 lncRNA upstream 74641 16152019 ~ 16152232 (+) True G578877
TU660425 lncRNA downstream 958 16228049 ~ 16228313 (+) True G578904
TU660426 lncRNA downstream 1533 16228624 ~ 16228837 (+) True G578905
TU660323 lncRNA downstream 40323 16267414 ~ 16268659 (+) False LOC110528895
TU660322 lncRNA downstream 40403 16267494 ~ 16268659 (+) True LOC110528895
TU660442 lncRNA downstream 53951 16281042 ~ 16281272 (+) True G578920
XR_005052533.1 mRNA upstream 16708 16202189 ~ 16210165 (+) False LOC110528873
XM_036982763.1 mRNA upstream 16709 16202189 ~ 16210164 (+) False LOC110528873
XM_036982764.1 mRNA upstream 16709 16202190 ~ 16210164 (+) True LOC110528873
XM_021611044.2 mRNA upstream 16710 16202190 ~ 16210163 (+) False LOC110528873
XM_036982754.1 mRNA upstream 49847 16161693 ~ 16177026 (+) False LOC110528882
XM_036982766.1 mRNA downstream 2713 16229804 ~ 16268664 (+) False LOC110528895
XM_036982765.1 mRNA downstream 2718 16229809 ~ 16268664 (+) False LOC110528895
XM_036982767.1 mRNA downstream 42109 16269200 ~ 16279190 (+) False LOC110528905
XM_036982768.1 mRNA downstream 42110 16269201 ~ 16279190 (+) True LOC110528905
LOC110528903 mRNA downstream 117667 16344758 ~ 16355299 (+) False LOC110528903
TU660317 other upstream 178866 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 221880 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 728287 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 762508 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 970666 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 230954 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 230954 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 235336 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 591451 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 815318 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile