RNA id: TU660465


Basic Information

Item Value
RNA id TU660465
length 583
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G578936
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16310221 ~ 16311581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggaaggacAGAAGCGAAGGCAGGAAATGCATGCAGGCTTACTGTCCCTCTGCAGCCACCGTAGCAGCCATTTTGTGGTTTCTCTGCGCTCTGGTAGGGGTCTTCAAAGTCCAGGTCTTTCTGGGCTCTGTAGGCCCTCAGGATCTCACTCTCTGTGTAGTCAGGACGCGAAAGCTGGGGGGCGTCACGACGGCTGCCGAAGTTCAGGTAGTCCTTTAACCACTTTGCCATGGGTGTTTTGATGGAAATCGGGGCCGTCAGCCAATTACGTATTTAATTGTGTGTCCACCCcccatgaattcacagaaatgtaattgtagctagctaacgttagcttgttaACTTCCCTCGGCTTGAGCTGAAGAAAACAAGTTTGCCTGCCACCAACGTAAATTAACTACACTACGTCAGTTTAAAACAAAGATTAAATGCATTTTGTAGAATATTATTTCacttagcaagctagctagctagttggctaacgTTACAATTTCTATCTAGCTAACTAATTAGACTATTTTAGTCCGAAATGGTTATCTCACTGAGCTATAATAAAAAGGGTTAGCTAGCTACAAGAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660459 lncRNA upstream 843 16305696 ~ 16309378 (+) True G578934
TU660442 lncRNA upstream 28949 16281042 ~ 16281272 (+) True G578920
TU660323 lncRNA upstream 41562 16267414 ~ 16268659 (+) False LOC110528895
TU660322 lncRNA upstream 41562 16267494 ~ 16268659 (+) True LOC110528895
TU660426 lncRNA upstream 81384 16228624 ~ 16228837 (+) True G578905
TU660502 lncRNA downstream 32711 16344292 ~ 16355250 (+) False LOC110528903
TU660503 lncRNA downstream 32711 16344292 ~ 16356747 (+) False LOC110528903
TU660506 lncRNA downstream 32711 16344292 ~ 16356633 (+) False LOC110528903
TU660496 lncRNA downstream 32894 16344475 ~ 16355250 (+) False LOC110528903
TU660501 lncRNA downstream 32894 16344475 ~ 16356805 (+) False LOC110528903
XM_036982767.1 mRNA upstream 31031 16269200 ~ 16279190 (+) False LOC110528905
XM_036982768.1 mRNA upstream 31031 16269201 ~ 16279190 (+) True LOC110528905
XM_036982766.1 mRNA upstream 41557 16229804 ~ 16268664 (+) False LOC110528895
XM_036982765.1 mRNA upstream 41557 16229809 ~ 16268664 (+) False LOC110528895
XM_036982764.1 mRNA upstream 100057 16202190 ~ 16210164 (+) True LOC110528873
LOC110528903 mRNA downstream 33177 16344758 ~ 16355299 (+) False LOC110528903
XM_036982773.1 mRNA downstream 66775 16378356 ~ 16397763 (+) False LOC110528784
XM_036982774.1 mRNA downstream 66775 16378356 ~ 16397763 (+) False LOC110528784
XM_036982775.1 mRNA downstream 66775 16378356 ~ 16397763 (+) False LOC110528784
XM_036982776.1 mRNA downstream 66775 16378356 ~ 16397763 (+) False LOC110528784
TU660317 other upstream 262214 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 305228 15993658 ~ 16004993 (+) True LOC110528906
TU659773 other upstream 811635 15492901 ~ 15498586 (+) True LOC110528902
TU659798 other upstream 845856 15462245 ~ 15464365 (+) True G578389
TU659333 other upstream 1054014 15255171 ~ 15256207 (+) True G578031
TU660552 other downstream 146464 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other downstream 146464 16458045 ~ 16460674 (+) False LOC110528786
TU660554 other downstream 150846 16462427 ~ 16463692 (+) True LOC110528786
TU661299 other downstream 506961 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 730828 17042409 ~ 17097924 (+) False LOC110527403

Expression Profile