RNA id: TU660985


Basic Information

Item Value
RNA id TU660985
length 222
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G579319
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16541841 ~ 16542062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAACCaaagactcacagacacacagtagAGTGTGTTAATATTAATGTGAGTGAGTTTAATTGGGGTTGTTTGCACAGGGCTGGTCCTGTGTGTAACCTATAAAATGGCAGTCCTGCGAGGTGTGACAGCAGCCAGGGAGAACGCTGACCTCCCACCCCAGGGATGCCATGTTGTATTTGACCCCAAAGATGACAGCCACCTCCCATAATTCATCTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660578 lncRNA upstream 32017 16509593 ~ 16509824 (+) True G579020
TU660559 lncRNA upstream 76291 16464952 ~ 16465550 (+) True G579001
TU660558 lncRNA upstream 77049 16464240 ~ 16464792 (+) True G579000
TU660551 lncRNA upstream 83891 16457220 ~ 16457950 (+) False LOC110528786
TU660531 lncRNA upstream 142743 16398697 ~ 16399098 (+) True G578977
TU660986 lncRNA downstream 941 16543003 ~ 16543433 (+) True G579320
TU660989 lncRNA downstream 2483 16544545 ~ 16544787 (+) True G579323
TU661004 lncRNA downstream 2798 16544860 ~ 16559048 (+) True LOC110528859
TU660997 lncRNA downstream 17401 16559463 ~ 16561262 (+) True G579326
TU661021 lncRNA downstream 49700 16591762 ~ 16591984 (+) True G579346
XM_036982786.1 mRNA upstream 3885 16510437 ~ 16537956 (+) False LOC110528787
XM_036982787.1 mRNA upstream 3885 16531473 ~ 16537956 (+) True LOC110528787
XM_036982785.1 mRNA upstream 78142 16457712 ~ 16463699 (+) False LOC110528786
XM_021611065.2 mRNA upstream 89791 16446388 ~ 16452050 (+) False LOC110528885
XM_021611064.2 mRNA upstream 89791 16446887 ~ 16452050 (+) True LOC110528885
XM_021611015.2 mRNA downstream 4253 16546315 ~ 16559294 (+) False LOC110528859
XM_021611016.2 mRNA downstream 4253 16546315 ~ 16559294 (+) False LOC110528859
XM_021611057.2 mRNA downstream 113024 16655086 ~ 16663049 (+) True LOC110528883
XM_036982796.1 mRNA downstream 121612 16663674 ~ 16671573 (+) False LOC110528869
XM_036982794.1 mRNA downstream 121618 16663680 ~ 16671573 (+) False LOC110528869
TU660554 other upstream 78149 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 80948 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 81167 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 493834 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 536848 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 276480 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 500347 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 552533 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 552533 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 791662 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile