RNA id: TU660986


Basic Information

Item Value
RNA id TU660986
length 431
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G579320
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16543003 ~ 16543433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattggctgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgtacatcgagagactgaaattttttcccattcttccttgtaaaacagctcgagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660985 lncRNA upstream 941 16541841 ~ 16542062 (+) True G579319
TU660578 lncRNA upstream 33179 16509593 ~ 16509824 (+) True G579020
TU660559 lncRNA upstream 77453 16464952 ~ 16465550 (+) True G579001
TU660558 lncRNA upstream 78211 16464240 ~ 16464792 (+) True G579000
TU660551 lncRNA upstream 85053 16457220 ~ 16457950 (+) False LOC110528786
TU660989 lncRNA downstream 1112 16544545 ~ 16544787 (+) True G579323
TU661004 lncRNA downstream 1427 16544860 ~ 16559048 (+) True LOC110528859
TU660997 lncRNA downstream 16030 16559463 ~ 16561262 (+) True G579326
TU661021 lncRNA downstream 48329 16591762 ~ 16591984 (+) True G579346
TU661023 lncRNA downstream 49981 16593414 ~ 16593919 (+) True G579348
XM_036982786.1 mRNA upstream 5047 16510437 ~ 16537956 (+) False LOC110528787
XM_036982787.1 mRNA upstream 5047 16531473 ~ 16537956 (+) True LOC110528787
XM_036982785.1 mRNA upstream 79304 16457712 ~ 16463699 (+) False LOC110528786
XM_021611065.2 mRNA upstream 90953 16446388 ~ 16452050 (+) False LOC110528885
XM_021611015.2 mRNA downstream 2882 16546315 ~ 16559294 (+) False LOC110528859
XM_021611016.2 mRNA downstream 2882 16546315 ~ 16559294 (+) False LOC110528859
XM_021611057.2 mRNA downstream 111653 16655086 ~ 16663049 (+) True LOC110528883
XM_036982796.1 mRNA downstream 120241 16663674 ~ 16671573 (+) False LOC110528869
XM_036982794.1 mRNA downstream 120247 16663680 ~ 16671573 (+) False LOC110528869
TU660554 other upstream 79311 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 82110 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 82329 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 494996 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 538010 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 275109 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 498976 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 551162 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 551162 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 790291 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile