RNA id: TU661021


Basic Information

Item Value
RNA id TU661021
length 223
lncRNA type intronic
GC content 0.47
exon number 1
gene id G579346
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16591762 ~ 16591984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTGACTGTTccttctcacttcatctgacctgacctcggcctgaattcctcactcctccctaatTCACTGCTGCCTTAACAGTGACTGAAACCAGGCGGttacccctttcctctctctcaagGATCCATGAGATTCAACAATAACATGTTCTAACAGAATGTAAGGTCCCTTCCTCACTCAGTAACATCCCATACACCTAGTTGTTATCCCTCCATTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU660997 lncRNA upstream 30500 16559463 ~ 16561262 (+) True G579326
TU661004 lncRNA upstream 32714 16544860 ~ 16559048 (+) True LOC110528859
TU660989 lncRNA upstream 46975 16544545 ~ 16544787 (+) True G579323
TU660986 lncRNA upstream 48329 16543003 ~ 16543433 (+) True G579320
TU660985 lncRNA upstream 49700 16541841 ~ 16542062 (+) True G579319
TU661023 lncRNA downstream 1430 16593414 ~ 16593919 (+) True G579348
TU661024 lncRNA downstream 4818 16596802 ~ 16597223 (+) True G579349
TU661025 lncRNA downstream 6008 16597992 ~ 16598298 (+) True G579350
TU661000 lncRNA downstream 6558 16598542 ~ 16600963 (+) True G579329
TU661032 lncRNA downstream 15025 16607009 ~ 16607296 (+) True G579354
XM_021611015.2 mRNA upstream 32468 16546315 ~ 16559294 (+) False LOC110528859
XM_021611016.2 mRNA upstream 32468 16546315 ~ 16559294 (+) False LOC110528859
XM_036982786.1 mRNA upstream 53806 16510437 ~ 16537956 (+) False LOC110528787
XM_036982787.1 mRNA upstream 53806 16531473 ~ 16537956 (+) True LOC110528787
XM_036982785.1 mRNA upstream 128063 16457712 ~ 16463699 (+) False LOC110528786
XM_021611057.2 mRNA downstream 63102 16655086 ~ 16663049 (+) True LOC110528883
XM_036982796.1 mRNA downstream 71690 16663674 ~ 16671573 (+) False LOC110528869
XM_036982794.1 mRNA downstream 71696 16663680 ~ 16671573 (+) False LOC110528869
XM_021611036.2 mRNA downstream 71713 16663697 ~ 16671573 (+) False LOC110528869
XM_036982795.1 mRNA downstream 71898 16663882 ~ 16671573 (+) False LOC110528869
TU660554 other upstream 128070 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 130869 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 131088 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 543755 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 586769 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 226558 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 450425 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 502611 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 502611 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 741740 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile