RNA id: TU661109


Basic Information

Item Value
RNA id TU661109
length 486
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G579404
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16707276 ~ 16708204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGCTTGCTGTGTACCTTCCGTTTCTCTCACTGGCAGGAGACAGTGGGTTCCTCAGTCTCAGCAGCCCAGCCACCCCTGCTACAGTCTTCTTCACAAAACTAACGATGTCTTTTCTTCGTCTCTTGATCGCCACTGGTTCACTCTGGCTAACATTTTCTGAAACATGAACGCTCTGGTAGTTCCTTTTGGTTGGCCTGGCGTTGCTATCCAGCCGTTGCGAGTCTATCTCCCCGCCAACGTTCAAACCAGGCCAACCGGAATGTTTTTGCCCGGTTATAGGCTCGAAGAGCGACGATAGTCCGTCAACTACCCATCCGTACATCACAGACAGATACGAGAGAATGGAAACTTCCTCGTACGGTCGGGCCAGGACTATCTGCGGTTTAAAATACAAGCTCAGTGGGCACAAATGTTCTACCTGCGCCAAACCACCATTCGCCTTCTATCTAGAACAGTTAGCCTAGCATTTAGCTTCGTGTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661097 lncRNA upstream 7445 16699589 ~ 16699831 (+) True G579400
TU661071 lncRNA upstream 15273 16691288 ~ 16692003 (+) False G579389
TU661072 lncRNA upstream 15273 16691331 ~ 16692003 (+) True G579389
TU661075 lncRNA upstream 35706 16669902 ~ 16671570 (+) True LOC110528869
TU661066 lncRNA upstream 54747 16652305 ~ 16652529 (+) True G579385
TU661228 lncRNA downstream 4737 16712941 ~ 16713968 (+) True G579509
TU661245 lncRNA downstream 27470 16735674 ~ 16736058 (+) True G579525
TU661246 lncRNA downstream 28689 16736893 ~ 16737230 (+) True G579526
TU661247 lncRNA downstream 29166 16737370 ~ 16738150 (+) True G579527
TU661250 lncRNA downstream 33754 16741958 ~ 16742196 (+) True G579530
XM_036982798.1 mRNA upstream 16204 16683082 ~ 16691072 (+) True LOC110528893
XR_005052535.1 mRNA upstream 19031 16683341 ~ 16688245 (+) True LOC118965266
XM_036982794.1 mRNA upstream 35703 16663680 ~ 16671573 (+) False LOC110528869
XM_036982805.1 mRNA downstream 39211 16747415 ~ 16763145 (+) False LOC110528788
XM_036982806.1 mRNA downstream 39211 16747415 ~ 16763145 (+) True LOC110528788
XM_036982809.1 mRNA downstream 198495 16906699 ~ 16920069 (+) False LOC110528796
XM_036982810.1 mRNA downstream 198495 16906699 ~ 16920069 (+) False LOC110528796
XM_036982811.1 mRNA downstream 198495 16906699 ~ 16920069 (+) False LOC110528796
TU660554 other upstream 243584 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 246383 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 246602 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 659269 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 702283 15993658 ~ 16004993 (+) True LOC110528906
TU661299 other downstream 110338 16818542 ~ 16819890 (+) True G579566
TU661421 other downstream 334205 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 386391 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 386391 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 625520 17333724 ~ 17334129 (+) True si:ch211-181l5.2

Expression Profile