RNA id: TU661299


Basic Information

Item Value
RNA id TU661299
length 1135
RNA type TUCP
GC content 0.50
exon number 5
gene id G579566
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16818542 ~ 16819890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtctctctgtgcaCTCGTTCCTCAGGTTGAAAGACAGAGCAGAGGGAGTTGAGGACGAGGGTTCCCATCTTGGAGGAGTTTCGCTCAGAGCTCTTGTAGTAATCCAGGGAGTTATGGGTTAACACGAACCAGCGTTTCTTCAGCTTCAGAACATTACTCTTAGTTCCTGTCTTCATCTCCTTCTGGAGCCAACCTtggggtaggagggagagagaggggagagagagagagagagagaaaggagaatgatacagagagagggagaggagagagagagagagagagagagagagagagagaggagagatagagagagagagggagggagagagcgagagagagagagggagagagggagataggagagagatagagagagggagatgggagagagatagagagagggagagagagagagagggagagagggacagagagagagagagagagatgaggggagataggagagagagagagagagagagagagagagagagagagagggagagagggagggagggagagacaataaCTGTGTGGTTGAGTTGTGTACCAGTGTGGGTGTGTAATGAGTAACATTTCCTGAAGACTAACACGTTGCACAGACCTATGTTccaacacacacacgtgtgtgtatttgagtgtgtctctgtgcgtgtctctatgtgtgtctctgtgtgtgtctctatgtgtgtctctatgtgtgtctctgtgtgtgcctctgtgtgtgcctctgtgtgtgcctctatgtgtgtctctgtgcgtgtctctgtgcgtgtctctgtgcgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtctgtctctgtgtgtttctctgtgtgtttctctgtgtgtgcctctatgtgtgtctctctgtgtttctctatgtgtgtctctctgtgtgtgtctctgtgtgtgtctctgtgtgtttctctgtgtgtttctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctatgtgtttctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtctctgtttgtgtctctgtgtgtctctatgtgtttctccatgtgtgtgtctctatgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661280 lncRNA upstream 15183 16801783 ~ 16803359 (+) True G579556
TU661226 lncRNA upstream 17928 16799416 ~ 16800614 (+) True G579507
TU661274 lncRNA upstream 22998 16795319 ~ 16795544 (+) True G579553
TU661229 lncRNA upstream 53934 16763451 ~ 16764608 (+) True G579510
TU661251 lncRNA upstream 75800 16742359 ~ 16742742 (+) True G579531
TU661301 lncRNA downstream 6572 16826462 ~ 16827211 (+) True G579567
TU661310 lncRNA downstream 7949 16827839 ~ 16828043 (+) True G579571
TU661315 lncRNA downstream 9927 16829817 ~ 16830259 (+) False G579574
TU661316 lncRNA downstream 9927 16829817 ~ 16830514 (+) False G579574
TU661313 lncRNA downstream 10110 16830000 ~ 16830259 (+) False G579574
XM_036982805.1 mRNA upstream 55397 16747415 ~ 16763145 (+) False LOC110528788
XM_036982806.1 mRNA upstream 55397 16747415 ~ 16763145 (+) True LOC110528788
XM_036982798.1 mRNA upstream 127470 16683082 ~ 16691072 (+) True LOC110528893
XR_005052535.1 mRNA upstream 130297 16683341 ~ 16688245 (+) True LOC118965266
XM_036982796.1 mRNA upstream 146969 16663674 ~ 16671573 (+) False LOC110528869
XM_036982809.1 mRNA downstream 86809 16906699 ~ 16920069 (+) False LOC110528796
XM_036982810.1 mRNA downstream 86809 16906699 ~ 16920069 (+) False LOC110528796
XM_036982811.1 mRNA downstream 86809 16906699 ~ 16920069 (+) False LOC110528796
XM_036982812.1 mRNA downstream 86809 16906699 ~ 16920069 (+) True LOC110528796
trnak-uuu mRNA downstream 105780 16925670 ~ 16925742 (+) True trnak-uuu
TU660554 other upstream 354850 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 357649 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 357868 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 770535 16046283 ~ 16048007 (+) True LOC110528915
TU660251 other upstream 813549 15993658 ~ 16004993 (+) True LOC110528906
TU661421 other downstream 222519 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 274705 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 274705 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 513834 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU662040 other downstream 578903 17398793 ~ 17400533 (+) True G580179

Expression Profile