RNA id: TU661319


Basic Information

Item Value
RNA id TU661319
length 493
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G579577
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16835069 ~ 16835561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtgtgtgtgtgtgtatatctgtgtgtgtgtgtatctgtgtgcgtgtgtctcagtgtgtgtgtgtgtgtatatctgtgtgtgtgtgtatctgtgtgtgtgtgtctcagtgtgtgtgtgtatatatctgtgtgtgtgtgtgcgtgtatctgtgtgtatgtgtctcagtgtgtgtgtgtgtatatctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtttacctgttgtaCTCCAGTTGTTCCAGGGAGAAGATGTGTTTGTTGAAGTACTCCTGGAGCTTCTCGTTGGCGTAGTTGATGTTGAACTGCTCAAACCGATTCACCTAgaggaacaacacacacacctttgagatatggagagaacgagtgtgtgtgtgtgtgtgtgtgtgtttgtgtgcatgtgagtgtgtgtgcatgtgagtgtgagtgtgtgtgattgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgtgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661317 lncRNA upstream 2860 16831926 ~ 16832209 (+) True G579575
TU661316 lncRNA upstream 4555 16829817 ~ 16830514 (+) False G579574
TU661314 lncRNA upstream 4555 16830000 ~ 16830514 (+) True G579574
TU661315 lncRNA upstream 4810 16829817 ~ 16830259 (+) False G579574
TU661313 lncRNA upstream 4810 16830000 ~ 16830259 (+) False G579574
TU661323 lncRNA downstream 12531 16848092 ~ 16848474 (+) True G579581
TU661347 lncRNA downstream 24019 16859580 ~ 16860072 (+) True G579600
TU661343 lncRNA downstream 97570 16933131 ~ 16938136 (+) True G579596
TU661397 lncRNA downstream 139571 16975132 ~ 16975406 (+) True G579638
TU661398 lncRNA downstream 143116 16978677 ~ 16978965 (+) True G579639
XM_036982805.1 mRNA upstream 71924 16747415 ~ 16763145 (+) False LOC110528788
XM_036982806.1 mRNA upstream 71924 16747415 ~ 16763145 (+) True LOC110528788
XM_036982798.1 mRNA upstream 143997 16683082 ~ 16691072 (+) True LOC110528893
XR_005052535.1 mRNA upstream 146824 16683341 ~ 16688245 (+) True LOC118965266
XM_036982797.1 mRNA upstream 163496 16664395 ~ 16671573 (+) False LOC110528869
XM_036982809.1 mRNA downstream 71138 16906699 ~ 16920069 (+) False LOC110528796
XM_036982810.1 mRNA downstream 71138 16906699 ~ 16920069 (+) False LOC110528796
XM_036982811.1 mRNA downstream 71138 16906699 ~ 16920069 (+) False LOC110528796
XM_036982812.1 mRNA downstream 71138 16906699 ~ 16920069 (+) True LOC110528796
trnak-uuu mRNA downstream 90109 16925670 ~ 16925742 (+) True trnak-uuu
TU661299 other upstream 15179 16818542 ~ 16819890 (+) True G579566
TU660554 other upstream 371377 16462427 ~ 16463692 (+) True LOC110528786
TU660552 other upstream 374176 16458045 ~ 16460893 (+) False LOC110528786
TU660553 other upstream 374395 16458045 ~ 16460674 (+) False LOC110528786
TU660317 other upstream 787062 16046283 ~ 16048007 (+) True LOC110528915
TU661421 other downstream 206848 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other downstream 259034 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other downstream 259034 17094595 ~ 17097540 (+) True LOC110527403
TU661990 other downstream 498163 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU662040 other downstream 563232 17398793 ~ 17400533 (+) True G580179

Expression Profile