RNA id: TU661482


Basic Information

Item Value
RNA id TU661482
length 225
lncRNA type intronic
GC content 0.43
exon number 1
gene id G579717
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17139509 ~ 17139733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAATATGTTCCAGTGTTGAATGGTGCAATTCAAGCCAGCCATGTGACCTGAACATTCAATCAGATGTGGATGTTTGTTTTCCACCTAAATGCAAATGTACAGTTACATAACAACCACCTTTGTCTTGACCCTGTGACCTCCTCGTCCCAAAGGTCATACAGCAGCTCTACACTGATTTACAGCCTACCCATTGGTCCATTATAAGGATTATTCTCTGGAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU661473 lncRNA upstream 14608 17124629 ~ 17124901 (+) True G579708
TU661469 lncRNA upstream 19438 17119785 ~ 17120071 (+) True G579704
TU661462 lncRNA upstream 30126 17109099 ~ 17109383 (+) True G579697
TU661461 lncRNA upstream 31018 17108246 ~ 17108491 (+) True G579696
TU661460 lncRNA upstream 33452 17105680 ~ 17106057 (+) True G579695
TU661447 lncRNA downstream 18144 17157877 ~ 17158347 (+) False LOC110527404
TU661448 lncRNA downstream 18144 17157877 ~ 17158284 (+) True LOC110527404
TU661449 lncRNA downstream 19002 17158735 ~ 17160551 (+) True G579684
TU661754 lncRNA downstream 22974 17162707 ~ 17163035 (+) True G579945
TU661769 lncRNA downstream 36162 17175895 ~ 17176780 (+) True G579956
XM_021608648.2 mRNA upstream 41980 17094545 ~ 17097529 (+) False LOC110527403
LOC110527402 mRNA upstream 80090 17057757 ~ 17059419 (+) False LOC110527402
XM_036982819.1 mRNA upstream 123962 17002517 ~ 17015547 (+) False LOC110528797
XR_005052699.1 mRNA downstream 47385 17187118 ~ 17189472 (+) True LOC110528798
XR_005052537.1 mRNA downstream 49799 17189532 ~ 17197507 (+) False LOC110527406
XR_005052539.1 mRNA downstream 49799 17189532 ~ 17197507 (+) False LOC110527406
XR_005052538.1 mRNA downstream 49898 17189631 ~ 17197507 (+) False LOC110527406
XM_036982829.1 mRNA downstream 54372 17194105 ~ 17197507 (+) False LOC110527406
TU661421 other upstream 41585 17042409 ~ 17097924 (+) False LOC110527403
TU661419 other upstream 41585 17094595 ~ 17097924 (+) False LOC110527403
TU661420 other upstream 41969 17094595 ~ 17097540 (+) True LOC110527403
TU661299 other upstream 319619 16818542 ~ 16819890 (+) True G579566
TU660554 other upstream 675817 16462427 ~ 16463692 (+) True LOC110528786
TU661990 other downstream 193991 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU662040 other downstream 259060 17398793 ~ 17400533 (+) True G580179
TU662189 other downstream 530542 17670275 ~ 17680668 (+) True G580315
TU662252 other downstream 673609 17813342 ~ 17816848 (+) True G580365
TU662969 other downstream 1352494 18492227 ~ 18492909 (+) True G580997

Expression Profile