RNA id: TU662381


Basic Information

Item Value
RNA id TU662381
length 2680
RNA type TUCP
GC content 0.41
exon number 1
gene id G580487
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17397857 ~ 17400536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATTTAATGAACAGCTTTCCTACAGGTGAACGTCTTGAATACCATCATACTGAACATACTAACTCATAGTTGGAAAGCAAACTTACAAGGTAAACTAATACAAGTCCTGTCCTAAATAACCAAAGTATGGGAGGGTGGTTAATGAATCCTTTATTGTGTTATTTACTATCGTATCTTACTTTAGATATCATGAGCAAGTCCTAGGTTGCAAAGCTACCGCTAATTCaccaaagttactggaattttcaGTCATTTTGGTAATTAAAATGTAATCTTTGGTAAATATGGTCATTTACTCGAataacttaaaaaatatatattcatatatgtatacattttttatatctgtgtccatattgtccatgactTTCTAGTGTATAGACCATATCGTTCAAGAGGAAAtaaatagcctaattaatgaaaaaaagcatctaatcaagaatggcattattttcatttaactctgcaactcttccaactattgacttttttcacaactgctaCCAGTTTGGCGCCAAAACAGttacaacaaagacagaaaagtgtgtaaaaaaaatataaaggTGTTttatgctgaaaccctcatattaaacaccaatggcattcactaagttgatggtttatatttggATAATATTTTACAGATTTTTCATTCAATTTCTTATTTTAAAATCTTATGTGATTATTTTATaaattttacatgtgataaggccacataGAGGGCCATATATacttacagacacctgtgataaacTGAAGTACCCAAAATGACCTGTAGATGTCATctgataaaatacaaaaaaaaagctaacaaaattctggtagtttactggtaaactttgaaagtttccagtattatacagtactgtGCAAACGTTTTAGGCAGGTGTGAAAAATTCTGTAAAGTAAGAATGCTTTCAAAAATAGACATGTTAATAGATTATATTTATCAATTAACAAAAATGCAAAGTGAGTGAACAGAAGAAAAATCTACatcaaatcaatatttggtgtgaccaccctttgccttcaaaaCAGCATCAATTCCTCTAGGTACATTTGCACACAGTTTGAAGGAGCTCAGCAGGTGGTTGGCCCAAACATCTTGGAGAACTAACCACAGTTCTTCTGTGGATTTAGGCAGCCTCAGGTGCTTCTCTCTTCATGTAATCCCAGACAGACATGATgatgttgagatcagggctctgtacCATCACTTCCATGACTCCTTGTTCTTCTTTACGCTGAAGATAGTTCTTAATGACTTTCACAGCATGTttggggtcgttgtcatgctgtaGAATACATTTGGGGCCAATCAGATGCCTCCCTGATGGTATTGCATGATAGATAAGTATCTGCATGTCCTTCTCAGCATTGAGGAGACCATTAATTCTGACCCAATCCCCAACTCCATTTGCAGAAATGCAGCCCCaaacctccaccatgcttcactgttgcctGCAGACACACATTCGTGATCCGCTCTCAGCACTTCGGTGAACAAACTGCCTTCTGCTACAGCCAAATATTtcacattttgactcatcagtCCAGAGCACCTGCTGCCATTTTTCTGTACCCCAGTTCCTGTGTTTTCGTGCATAGTTGAGTCGCTTGGCCTTGTTTCCACGTCAGAGGTAtggcttttatttttatttaaaaaatgtagcccctttttctccccaatttcgtggtatccaattgttagtagctactatcttatctcatcaactcccgtacgggctcgacgaaggtcgaaagtcatgcgtcctccgatacacaacccaaccaagtcgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcaccaatgtgtcggaggaaacactgtgcacctggcgaccttggttagcgtgcactgcgcccggcccgccacaggagtcgctggtgtgcgatgagacaaggacaaggacatccctaacggccaaaccctccctatcccggacgacgctaggccaattgtacgtcgccccacggacctcccggtgtgcgcgaacccagagtctctggtggcacccGGGAGGCCTGGAGGTATGGCTTTTTGGCCGCAAGTCTTCCAGGAAGGGCACTTCTGAGCATACATCTACGGACAGTAGATGGGTGTACCAGTGTCCCTCTGTTTTCTGCCAATTCTGATTGTGAAGGGAAGTAAGCATGATGTGTCTTTCATCTGCTGCAGTAAGTTTCCTTGGCCGACCACTGAATCTACGGTCCTCAACATTGTCCGTTTCTTTGTGCTTCTTCAAAAAACATCTGGAAACCCCTGTCTGCCTTGATATTTCTGCCTGGGAGAGACCTTGTTGATGCAGTATAACTACCTTGTGTCTTGTTGCTGGGCTCAGTCTTGCCATGGTGTATGACTTTTGACAGTAAACTGTCTTCAGCAACCTCACCTTGTTAGCTTACCTGCCTAAAATGTTTGCACAGTACTgcaccctccctttgcaaccctaagcGAACCACATTACTTTTCAAGAATCCTGAGGCGCTCATTTTATTTACGTACAGTCCTAGAGTTGTTCAGCAACTTTGAAGAACAGACAAGCATTAGAAAATGAACACACAATAAACTCTGCATGAGAGGAGAAACTAAAGTTTACCACATCATAATAcatagtaataataaatacatccATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662378 lncRNA downstream 3671 17393955 ~ 17394186 (-) True G580485
TU662362 lncRNA downstream 20683 17376930 ~ 17377174 (-) True G580471
TU662361 lncRNA downstream 21604 17375981 ~ 17376253 (-) True G580470
TU662359 lncRNA downstream 24376 17372778 ~ 17373481 (-) True G580468
TU662028 lncRNA downstream 33919 17363673 ~ 17363938 (-) True G580167
TU662415 lncRNA upstream 65053 17465589 ~ 17465834 (-) True G580520
TU662416 lncRNA upstream 65584 17466120 ~ 17466464 (-) True G580521
TU662418 lncRNA upstream 96191 17496727 ~ 17498970 (-) False G580523
TU662420 lncRNA upstream 96191 17496727 ~ 17498970 (-) False G580523
TU662421 lncRNA upstream 96191 17496727 ~ 17504537 (-) True G580523
XM_021608657.2 mRNA downstream 46289 17336371 ~ 17351568 (-) True LOC110527407
XR_005052701.1 mRNA downstream 85126 17309452 ~ 17312731 (-) False LOC110527097
XR_005052700.1 mRNA downstream 99816 17297434 ~ 17298041 (-) False LOC118965375
XM_036982833.1 mRNA downstream 109402 17270117 ~ 17288455 (-) True LOC100653440
XM_021608654.2 mRNA downstream 109407 17262180 ~ 17288450 (-) False LOC100653440
XM_021608662.2 mRNA upstream 6380 17406916 ~ 17410539 (-) False LOC110527411
XM_036982834.1 mRNA upstream 6380 17406916 ~ 17425011 (-) True LOC110527411
XM_036984414.1 mRNA upstream 12644 17413180 ~ 17416483 (-) True LOC110527412
XM_021608667.2 mRNA upstream 26004 17426540 ~ 17430088 (-) True LOC110527414
XM_036982836.1 mRNA upstream 31358 17431894 ~ 17457538 (-) False LOC110527413
TU661518 other downstream 597171 16797782 ~ 16800686 (-) True LOC110527396
TU661517 other downstream 597235 16797680 ~ 16800622 (-) False LOC110527396
TU661516 other downstream 597235 16797782 ~ 16800622 (-) False LOC110527396
TU661132 other downstream 836712 16559963 ~ 16561145 (-) False LOC110528867
TU660944 other downstream 932323 16464942 ~ 16465534 (-) True G579278
TU663064 other upstream 642391 18042927 ~ 18043380 (-) True G581089
TU663175 other upstream 816622 18217158 ~ 18235038 (-) True G581174
TU665792 other upstream 2815113 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 3372331 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 3437952 20838488 ~ 20839336 (-) False LOC110527470

Expression Profile