RNA id: TU662209


Basic Information

Item Value
RNA id TU662209
length 2589
lncRNA type read_through
GC content 0.49
exon number 3
gene id G580334
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17687465 ~ 17757779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCGAGCGGAGGTATGGTGGTGAATGAATGCAAAGCTCGCCGTAGCGGGGAAGTGAGGTAACTAAACCAGGCTCCATGAGAGTCGCAAAATAAATCCTCTTCTTTTTCTCCGGCCCTGTCTGCAGTCATGTTTCCCAGTAAGGGAGTGCTGCTCttggatcagctttctccattcaaatctttcCTTGACATtataattattccacaatactgacaatggatcagctcctagagagatattaccaCCTACGGCTACAAATATTGAGGAGGCTTATTctaatgaagggagagagagagagagagagagagagagagagagagagagagagagcgagagagcgagagagagagagcgagagagagagagattaaaataTATCTGTCGGACACATTGCTTTGTGACAATGAAGGTCTACGAAGATGAAGATCTCATTGAATCACTCCCAATGGATCTGTTGACGTACATTCAGGATCTCTGTGTCCGTGGGTGTGTTCATAGAAACAGCGTGGGGAGAACAACAGCAATTCATATAGAGGTACAAGATATATCTTTGCCAAGTGTAAACGATGATAGGTTGTGGAATTAAGCGTGTGCATAATGTAACGTTAACGTGATAAATAACCTTGCCTGAGATCTGAAGACCTGGGTTAGCTCCCCGAGCTAAGTCTCAGACCTTACCTCAGTGGGCTAGCACAGTCTTGTGGTGTGCAGGAGACCCGGTTAGttacatatacagtatctatGCTTATTCCCAGAGGGATACACGAAAACTGCGGCCTGAGCAGTTCTGGGAGTAACAAAACGCATGTGGTGTTAGTATTGGAACATGGATTTGTTAAGTAGCTGAGTTTTGCTGTACATGGTGTTCTTAAAACCGTGAAAAGCAGTGGACACATTCTCACAATTACACGATAAAACATTCCTTAccataaaaaaaaagaagttatacAAAAATGCAAGAACCTTAAGTAACACGGCGACCGTTATTCAAGACACTGGATGTATGATGGTAGCAGCAGCACTAGCTACAGAAAACTTCACAGTATACACAGGTGTGTCAGATAGTAACACTCAACAGAAAATCACAAGCGGTTTCGCAGCGGCTTTTTGAGTCGCCGTCTTTCACTTACTCCTGGCAGTGATACATAGCAATAATCTTCCCCTGCCTTGTTACTATGTAACCCCCTGGAACAGTCCCCTTAAATGGCTCCAAACCTGCTCTCTGGCCTCAGCCTTAGCTAGCTACATATCAGTTTGGCCTAGCAcccaacaccaccacacaccctaCACCAACACATTAGCATTTAGCATACATCGATAATCCAAAACTGTAAACAAGTTTTCCTTCAAAGCAAATGTCTCAGTACTCATCATTTCTCCTCTTGTTCACTTGTTTATTTTCCTCTTagatctttctctctgtcctctttctccctctgttctttCTCATATTTGTCCTTTTCCGACTTTGTGGCACTGTTGTACGAAGGCAGCGAGGCGGTGGAGGACGTCATGTCCATTTTCTCTGTGGAGGTGGAGTTGTCCGCAAACTTCCCAATCACCAGCACCTCCTTGTCCTCCAGCTCGCACATCATGCTGCCTTTAGGCTGCTCCTTGTAGAGCTCTGCTGCTTTCTTCAGGGCGAGTCGGGCCAGGTAGCGCCTGAAGGACCTCTGGATCACCACGGCAGACATGTCTTCCTGCTTGCGCCGCAAGGTACTGGTGATGGGTTCGTAGGATACTTTGGAGGGATTGGAGGCCATGAAGCGCTCCTCCATCTGGCCCCGGAGGAGGTCCAAGCCTTCGCCTTCTCCCAGGACACGCTTGGTGAAGGCAAACAGGATGTCAAGGCAGTGGATGCGCTCCCCGCTGACCATGGGCAGATCCATTTTGATCAGCTGGATGTGGTTGGGCTTGGCCATTCGCAGCGGTGGGTCCAAAGCGTCTGCAAAGTCCGACAGCTTGTCGTACTCCACGAACTGCGTGGCGTCCGGGTCGAAGCGCTCCCACACCTCGTAGAACATCTCAAAGTCGTCCTCGCTCAGCGGCTCGGCCGACTCCTCGGTGGCCACGCTGAAGTTCTCCAGGATGACAGCGATGTACATGTTGACCACGATGAGGAAACAGATGATGATGTAGCTGACGAAAAAGAACATGGCCACTGGCGGGTTGCCGCAGTTTCCCCGGTACAAGGTGCCCGGGTGCTCCATCTGGCTGTCACAGTCGGGCTCCTTCTTGTTGAGGATGGGCGCCAGGAGGCCGTCCCAGCCCGCTGACGTGGTGATCTGGAACAGGCAGAGCATGCTGTTGCCGAACGTCTCGAAGTTGAACATGTCGTCGATTCCCGCCTCGTGCTTGACGTAGGCGAAGTTGGACATGCCGAAGATGGCGTAGATGAACATGACCAGGAAGAGCAGGAGGCCAATGTTAAACAGGGCAGGAAGTGACATCATCAAGGCGAACAAAAGCGTCCGGATGCCCTTGGCGCCCTTGATGAGACGGAGGATGCGGCCGATTCTGGCAAGTCGGATGACTCGGAATAACGTTGGGGAAACAAAGTACTTCTCAATCAATTCTGATAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662191 lncRNA upstream 23968 17662692 ~ 17663497 (+) True G580317
TU662195 lncRNA upstream 42160 17645043 ~ 17645305 (+) True G580321
TU662194 lncRNA upstream 42627 17644537 ~ 17644838 (+) True G580320
TU662172 lncRNA upstream 64010 17623242 ~ 17623455 (+) True G580298
TU662164 lncRNA upstream 76437 17610807 ~ 17611028 (+) True G580291
TU662267 lncRNA downstream 15941 17773720 ~ 17774340 (+) True G580380
TU662249 lncRNA downstream 61853 17819632 ~ 17821718 (+) True G580363
TU662348 lncRNA downstream 148738 17906517 ~ 17907214 (+) True G580457
TU662353 lncRNA downstream 156007 17913786 ~ 17914011 (+) True G580462
TU662337 lncRNA downstream 167900 17925679 ~ 17926861 (+) True LOC110528802
XM_021608672.2 mRNA upstream 168977 17514236 ~ 17518488 (+) True LOC100136260
XM_036981855.1 mRNA upstream 191260 17484375 ~ 17496205 (+) False abcb11b
NM_001124656.1 mRNA upstream 191260 17484577 ~ 17496205 (+) True abcb11b
XM_021608668.2 mRNA upstream 213527 17468347 ~ 17473938 (+) True LOC100136600
XM_021608660.2 mRNA upstream 289447 17372378 ~ 17398018 (+) True LOC110527410
LOC110528802 mRNA downstream 134176 17891955 ~ 17929312 (+) False LOC110528802
XM_036982845.1 mRNA downstream 244554 18002333 ~ 18079999 (+) False LOC110527422
XM_036982846.1 mRNA downstream 244554 18002333 ~ 18079999 (+) False LOC110527422
XM_036982847.1 mRNA downstream 244554 18002333 ~ 18079999 (+) False LOC110527422
XM_036982848.1 mRNA downstream 244555 18002334 ~ 18079999 (+) True LOC110527422
TU662189 other upstream 6797 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 286932 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 353336 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661421 other upstream 589541 17042409 ~ 17097924 (+) False LOC110527403
TU662252 other downstream 55563 17813342 ~ 17816848 (+) True G580365
TU662969 other downstream 734448 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 1218899 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 2260076 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 2481132 20238911 ~ 20239797 (+) True G583605

Expression Profile