RNA id: TU662560


Basic Information

Item Value
RNA id TU662560
length 2314
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G580648
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17747688 ~ 17750095 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTCTCAAAGTCTGATGTTTGTGGAAAAAGGAACAAATGTTGGTGTAAAAAAgaagagacaaacagagaaaatCTATTTTTGGCCCCCAGTTCTAGACAGTCTTGATAAACAAAGAGACATTCTGGAACAAAACTAAACTGAACAGGACGTCTGTGTCCCAAATACCCTATAAGGGTACTACTTCCCtgttcaaaagaagtgcactatatagggaataaggtgccatttgggacaaagttaaaaaaaaaaaaaaaaaacatgagctCTGTGAACTTCAAGGCCTTCATGACACAATAGACTGCTGCGAGAATTAATCACAATAAAATACCCAGTTTCACATTTACCACAATATAGACTACAAAATCATATCTACAGCAGAATAGCAGAGACTGCAGAGACTGGTACAGTAGCTTACTTCACTATAGATCACCTGAACATGAACGCTTTGGCACCCTTACGCTACACACCACCTCATTGGCTGACGTGATATGATGTCacaggatgggagagaggagagagaggtcatgagagcgagagaaagagagcgtgagagagcaagaaagacagagagagcgagagcgaggagAACCATAAAGGGGCTAGATGAAGAGACTGGATAcatagagaaaagagagaggagaaccaTAAAGGGGCTAGATGAAGAGACTGGATAcatagagaaaagagagaggagacaaagaaCATGTTGTGATGGAGTAGGTTCATTCCTTCCTCAATCCCTCCAGTACCCCCTGCACACTGTAATAACAGTACTGGTACTGCACTGACCTGTATATTAGAACGTTATAGAACTCCCTTCTCCTGTTTCTTTTATTTTCATCTTCTGTCGCATTTCATGTGTTTTATTTCTTATCTGTAATACTACCGCTATTGCGCATTTTTTTGGTAAAGAGCCCCCAATTAAGGTTCTCCCTGCACTGTTTTACACCTGCTgtgtcctgtgcatgtgacaataaagCTTGATGACAAGTCATAATAGCAGCACTGAAAATATAGCGTGTCTCATGAAATTTGGCAAGACGTTTAAAACGATTTCAAACGACGTACATCTTCCAGGTTTCATGGTCCTTTTGGAATTGGACCTAAATGTAAGGGTACGACTAGAGATGATTATACGTCTGTGGCTCTAACTACAGTATCTTGGAGTATTGTCCAATCTAATGTAAAGTATAAATGTTATTTCATTTGTTTCCTTTTGACAttctcactgtatatatatatatatatatatatataaaaactcaTTTTTAAACATTGTGTTTCCTTTTAACAAAATACATGCAAAGTATTCAACATCTAAGAGACAACACAAATAAACACGAGACCAACACTTAATAATTGTAGTACCTCAGAATCGTGTTGATTTGTCATCAATACTAACCACAGCATGCTCGCATTATCAAAACTTACATAACATTACATAAACGTTGTATAGCCATAAATAAACTGCAGCTATATACATTTTCCAGTTGACCCCATATAAAAGTTCAATCTACTAAGGCTGTGACTATACCAGTATTgcaatattttttccatggcaattttttctttttttacacgAAGCAGACAAAACTCTTTGGTCTATTAAAAACCTGCTATATGTAAATAACGCGTGCGATAGCATgggaaataaatacatgtgagTCTGGGTGACAACATAATGTTtatttccaacattagggctgttttccccAAATAAGTGAAATCCGCTTCGTGTTTTGTTTCATTGCCACGCTACCAACAAGTATTGCGTTACTGATATCGTCCAAGCCCTAGCGTCTATCTTAGCTCATTCATTTAACTCAAATAAGATgatcttttcattttcccattcGTCATGGTTATATTGTTGAAATAAGGAATCATTTTGTTTCATTCTAACTATTTCACAGTCATCGTCCAATAGCTGTTAGACACTCAGATCCAGGACATGGAAACTGTGTGCATAATAATGTGCAAAGATCCTTCTGAGGCAAAACCCCACAACTTGCCTTTGCAACCTAATCGTTCACTTTAAAAAGGTACATTCGTCGGGAGTTAAAAACAACAAACACCGTCCTTCAGGTTCTATTCAATCAAACGGGCGACCCGGTTTCTAGGATAGGTCACAAACAGCATTATTCCTGTACAGAAAATGAATTGATATTGACATCATGTAGTTTCACTggtaaagggatacttcaggattttggcaatgaagcccattatctacttccccagtcggatgaactcatggataccatttttatgtccctGCATCCTTCATCCAGTACAAAGGAAGTTAAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662521 lncRNA downstream 98838 17648579 ~ 17648915 (-) True G580621
TU662519 lncRNA downstream 101027 17646519 ~ 17646726 (-) True G580619
TU662518 lncRNA downstream 101572 17645972 ~ 17646181 (-) True G580618
TU662514 lncRNA downstream 103572 17643978 ~ 17644181 (-) True G580614
TU662511 lncRNA downstream 105893 17641639 ~ 17641860 (-) True G580611
TU662571 lncRNA upstream 23690 17773785 ~ 17774331 (-) True G580657
TU662589 lncRNA upstream 68015 17818110 ~ 17822171 (-) True G580674
TU662645 lncRNA upstream 163248 17913343 ~ 17913585 (-) True G580729
TU662653 lncRNA upstream 175654 17925749 ~ 17927237 (-) True G580737
TU662654 lncRNA upstream 177283 17927378 ~ 17929273 (-) True G580738
XM_036982838.1 mRNA downstream 32819 17665513 ~ 17714934 (-) True LOC110528801
XM_036982839.1 mRNA downstream 33830 17665513 ~ 17713923 (-) False LOC110528801
XM_036982840.1 mRNA downstream 33831 17665513 ~ 17713922 (-) False LOC110528801
XM_036982841.1 mRNA downstream 58437 17665513 ~ 17689316 (-) False LOC110528801
XR_005052541.1 mRNA downstream 85257 17542877 ~ 17662496 (-) False LOC110527416
XM_036982843.1 mRNA upstream 5231 17755326 ~ 17803651 (-) False LOC110527420
XM_036982844.1 mRNA upstream 5231 17755326 ~ 17803651 (-) True LOC110527420
XM_021608262.2 mRNA upstream 73431 17823526 ~ 17827349 (-) True LOC110527099
XR_002474132.2 mRNA upstream 184699 17934794 ~ 17940045 (-) True LOC110527421
XM_036982850.1 mRNA upstream 329896 18079991 ~ 18090210 (-) False LOC110527423
TU662381 other downstream 347217 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 947067 16797782 ~ 16800686 (-) True LOC110527396
TU661517 other downstream 947131 16797680 ~ 16800622 (-) False LOC110527396
TU661516 other downstream 947131 16797782 ~ 16800622 (-) False LOC110527396
TU661132 other downstream 1186608 16559963 ~ 16561145 (-) False LOC110528867
TU663064 other upstream 292832 18042927 ~ 18043380 (-) True G581089
TU663175 other upstream 467063 18217158 ~ 18235038 (-) True G581174
TU665792 other upstream 2465554 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 3022772 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 3088393 20838488 ~ 20839336 (-) False LOC110527470

Expression Profile