RNA id: TU662589


Basic Information

Item Value
RNA id TU662589
length 3114
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G580674
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17818110 ~ 17822171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTTGTCACTTGTACTGGATATCTTTAGGTAGCTtcagtgtgtgggtgtgcgtcTCTCCTCTACCTTCGAGACGTGACTCTCCCTTAGGGGCGATAATGGCATTCTCCATGACAACGGCCACATGACATCGCCGCTGCCCTTGAGGGCGAGGACACATCCTCCGGGGGGGATCACCGTGGAAACACGATAGGGTCAGAGGTCGCTTCACAagctagaggagaggagtgtatcCCAGCGCTCTGCCCTGGTCTGGTAGTAAGAGACTTTAACCACAGGCTGCATCTGCTCTGGCTAGGCCTGACTATGTAGCGATGGCTGCttgctggctgtctctctctaagGCCAGAGCTGAATCAATATACTGTGGATGCACTCAGCACCCATGCATACTGTTACACAGTGCAGCCTTCGGGCAGGGGTACAGTATGTCAACAGTACAAGATTTAACACTGTACATCATCTCAGTTtattcagtaatgtgttgcaCTCTGAACAACAATGCATAGCAAGAACATGATTTATTTCACATCATGTCCATTTCATATTACATATCATCTTCTTGCAATGTTCTAAACATGGCACCCTGTAGAATAGCCTTGTCAAATACCAACCATAACTTAATAAATTGAAAAAGATAACAAGGCTTGAAATAAAAACACActaatgcatttaaaaaaagataTAACCAGTAAAGACAAAGAAGATGAACGATAATTGATGCTCTTCTTTAGTATCTGGATGTCAATGCTAATAATTGATCAAGTGTGGATCACAAAACAGCTCACTCAGTGGTTCTGTGCATGAGATATTTGTGAGGTGTGCTCCTGCCCTCCAGTGGCAAAAGAAAGCAACACACTAGTTGATTAAGGCATATCATTTACTTATAGTAATGTTACATGTCtgggaaaaaatatatagaataatTCACTCAGAAAGGTGTGATATGTACAGAATGAAATGTAACATTTTAAGTCGTCTTATTTCAGAGTTCTGTCCTTGGCAAACAAAAAGAGATGGTGAGGAGAGATTACATATGATTTAATCTCGGTTTTGGCACATTTCAACACTAACGAGTCAGCAGGAAACTCCAAGTACAAAAATGTAGAGCCCATAAATACTGTACTACCAAGGTCAAATAAATACATCTTCGCATAAAAGTCAAATATCGTAATAACATAAGGAAAAGGCAGCACTGCCTCCAATTAATTCAGGTAGCATGAtacaaaaacaaacattcagtGAACATAAAATGACCTGTACACTAACCAAACTCTTGGATTAAGTCTTGGATAAATGTTGTTTTTATAACGCGCTGACtCCCAGTGCAAAACAGGGGCCTGGGCTTCTGGGATTTGTCAGTCGACCTCTAAGTGGGGTCCATTTGGAGGTCATGTGACTATGTGGTGGCCGGCACTACTTCACTGCAGTTGCCTCGACCTAAACAGAAACTTCCATTTCACAGATTTACTATGAAGCCATTATGGCCCCTGTAGGACAAGAGACACGAATATCACCAGTTTAGATTAGGTCCTTCCTCCACCAGGTCACACAGAGTGTGAGCATGTCCATAGATGTATTCTACAGGGCCATATACCACCTTTTGCACATACACATGAAGATAACAAACAAACACTAAGGTGTCTCAGAAGAAAGGCATATGTCGCCATTTAATGTAACAAATGGCGTCTTtccagagagaaaaaaataataatcacactGTAGAATGTACACACTTCCATAAAGATATGCCCTTCCCTTCTTTCCTGTGTaatgcagtggaggctggtggggtgAGCTGTATGAGGGCAGGCTCATTGCAATGTCTGGAATGGAAGGGTATCCAACACATAGAAACCCTGTTTCactccgttccatttattccattccagccattccaatgagcccgtcctcctatggctcctcccaccagcctccactggtgtaaaGAGTTCACCTGTGGAACATGTGAGGTTCACAGAGAGATCATGAAAGTTAAGAATGGCAACTTTATGTATAGAAGGAAGCACATTGCAGTATGATAGGGGTAAACAATGGTTCAGTTTTGGGTCCAATCCAGTTGCTACAATGGCAAAATGTGCATGTCATCACTGTGTCAGTGCAGGTCAAAATCATCACTCACCGCATTGGTTAGCAGTAAAGCAGTGGAGGGTGAGGAGCCGGAGAAGGAGGGAAGCAAGTCTGGTGCTGGCCTTCGAGGACAGGAGGACTGGGACTTACGGGCGGCTAGAGTCACAGCCTGGGTAAAGCAGGAGGGAATGGCAGTTTTCCTGGCCAGGGCTGCAGGCACGTATGGTTTGGGTGAAGTCAAATTAATCATGTTCAGTTTGGGTGAAGAAGAGGCATCAGTCTGATTGTCTCCCTCCGCTGATTCGCAGAAGGTATGACTCATCGtaggaagagaagggggaggataAGAGGGAGGGCGATGATTTGTTCCCCCAGGAGGCCTCACTCGTAACTGGGCCGGCTCCGTCTCCTCCACCTCCTTATCATAGCACacagggggatggggagggggaggagggaaacAGAAACGGTCCACTTCTGCCTCCTCTATCACCAGACTGGGCTTCCAGAACAATCCCCTGCTCTCCAGTAGTTCAGGAGTTGAGGTCACCTCATCTCCAGGTATTCCATTGGTGTGGGCCAAAGCTGTGTATGGGTTGGATATCTCTGAGAGTGTATCCGACTCCTCTGGGACTGTCCTGATGCGTCTCTCTAGAAGGCACAGCTATGATGCTGCAGGAAATAAAGCAATGTGTGACTGTACTGAGAAACCTACCATCTAAACCCAGAGAAACTAAACAAAAGGTTACACAGGCGGTAAAagcacaacacactaacacatgaaACAGAAATCAAATAAAGAGCTTATAAAGAAGACAACCGAGTGATAAACACAACAGTCCAAAAAACCAACATGGAGGAGAGCAGGAAGAATCGTTCACCACGGGGACAAGAGGAGAGtggaacagaaggagcagcacagaggaagaggaaaggaggacGCAGCTCTCACTCGCCGTCTGCAGGGGAGAAAGAAGGGGACACTGCTTAGAACAGTGGTCTACAATCCTGCTCAGGTGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662571 lncRNA downstream 43779 17773785 ~ 17774331 (-) True G580657
TU662555 lncRNA downstream 68015 17747688 ~ 17750095 (-) False G580648
TU662560 lncRNA downstream 68015 17747753 ~ 17750095 (-) True G580648
TU662521 lncRNA downstream 169195 17648579 ~ 17648915 (-) True G580621
TU662519 lncRNA downstream 171384 17646519 ~ 17646726 (-) True G580619
TU662645 lncRNA upstream 91172 17913343 ~ 17913585 (-) True G580729
TU662653 lncRNA upstream 103578 17925749 ~ 17927237 (-) True G580737
TU662654 lncRNA upstream 105207 17927378 ~ 17929273 (-) True G580738
TU662657 lncRNA upstream 109883 17932054 ~ 17932260 (-) True G580741
TU663022 lncRNA upstream 159610 17981781 ~ 17982024 (-) True G581049
XM_036982843.1 mRNA downstream 14459 17755326 ~ 17803651 (-) False LOC110527420
XM_036982844.1 mRNA downstream 14459 17755326 ~ 17803651 (-) True LOC110527420
XM_036982838.1 mRNA downstream 103176 17665513 ~ 17714934 (-) True LOC110528801
XM_036982839.1 mRNA downstream 104187 17665513 ~ 17713923 (-) False LOC110528801
XM_036982840.1 mRNA downstream 104188 17665513 ~ 17713922 (-) False LOC110528801
XM_021608262.2 mRNA upstream 1355 17823526 ~ 17827349 (-) True LOC110527099
XR_002474132.2 mRNA upstream 112623 17934794 ~ 17940045 (-) True LOC110527421
XM_036982850.1 mRNA upstream 257820 18079991 ~ 18090210 (-) False LOC110527423
XM_036982849.1 mRNA upstream 257820 18079991 ~ 18090254 (-) False LOC110527423
XM_021608685.2 mRNA upstream 257820 18079991 ~ 18090271 (-) True LOC110527423
TU662381 other downstream 417574 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 1017424 16797782 ~ 16800686 (-) True LOC110527396
TU661517 other downstream 1017488 16797680 ~ 16800622 (-) False LOC110527396
TU661516 other downstream 1017488 16797782 ~ 16800622 (-) False LOC110527396
TU661132 other downstream 1256965 16559963 ~ 16561145 (-) False LOC110528867
TU663064 other upstream 220756 18042927 ~ 18043380 (-) True G581089
TU663175 other upstream 394987 18217158 ~ 18235038 (-) True G581174
TU665792 other upstream 2393478 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 2950696 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 3016317 20838488 ~ 20839336 (-) False LOC110527470

Expression Profile