RNA id: TU662353


Basic Information

Item Value
RNA id TU662353
length 226
lncRNA type intronic
GC content 0.36
exon number 1
gene id G580462
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17913786 ~ 17914011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggactagttaactgtgcggttgcaagaatcgggacccctgagctgacaaggtgaaaatctgtcgttccgcccctgaacaaggcagttaacccacagtttctaggcagtcattgaaaataagaatgtgttcttaactgacttgcctagttaaataaagttaataGTTAAATagaaggtataaaaaaaaatatttaaaaaataaaataataataatcggaaatcggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662348 lncRNA upstream 6572 17906517 ~ 17907214 (+) True G580457
TU662249 lncRNA upstream 92068 17819632 ~ 17821718 (+) True G580363
TU662267 lncRNA upstream 139446 17773720 ~ 17774340 (+) True G580380
TU662208 lncRNA upstream 156007 17754547 ~ 17757779 (+) True G580334
TU662221 lncRNA upstream 163698 17747774 ~ 17750088 (+) False LOC110527418
TU662337 lncRNA downstream 11668 17925679 ~ 17926861 (+) True LOC110528802
TU662699 lncRNA downstream 61903 17975914 ~ 17976185 (+) True G580781
TU662731 lncRNA downstream 73260 17987271 ~ 17987849 (+) True G580802
TU662732 lncRNA downstream 74211 17988222 ~ 17988437 (+) True G580803
TU662738 lncRNA downstream 91310 18005321 ~ 18005521 (+) True G580809
XM_021608680.2 mRNA upstream 163679 17726890 ~ 17750107 (+) False LOC110527418
XM_036982842.1 mRNA upstream 163679 17726890 ~ 17750107 (+) False LOC110527418
XM_021608672.2 mRNA upstream 395298 17514236 ~ 17518488 (+) True LOC100136260
XM_036981855.1 mRNA upstream 417581 17484375 ~ 17496205 (+) False abcb11b
XM_036982845.1 mRNA downstream 88322 18002333 ~ 18079999 (+) False LOC110527422
XM_036982846.1 mRNA downstream 88322 18002333 ~ 18079999 (+) False LOC110527422
XM_036982847.1 mRNA downstream 88322 18002333 ~ 18079999 (+) False LOC110527422
XM_036982848.1 mRNA downstream 88323 18002334 ~ 18079999 (+) True LOC110527422
XM_036982854.1 mRNA downstream 182446 18096457 ~ 18107236 (+) True LOC110527424
TU662252 other upstream 96938 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 233118 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 513253 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 579657 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661420 other upstream 816246 17094595 ~ 17097540 (+) True LOC110527403
TU662969 other downstream 578216 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 1062667 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 2103844 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 2324900 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 3166817 21080828 ~ 21082615 (+) True G584643

Expression Profile